Ligand validation:2VDN

NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose

NAG is a Ligand Of Interest in 2VDN designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
2VDN_NAG_B_3099	11%	59%	0.283	0.797	0.58	0.96	-	1	0	0	100%	0.9333
2VDN_NAG_A_3015	2%	62%	0.538	0.798	0.5	0.93	-	-	0	0	100%	0.9333
2VDN_NAG_A_3249	1%	68%	0.489	0.651	0.5	0.72	-	-	0	0	100%	0.6533
7UKP_NAG_D_2003	34%	75%	0.207	0.891	0.42	0.54	-	-	0	0	100%	0.9333
7UDG_NAG_B_2003	32%	61%	0.22	0.893	0.65	0.82	-	1	0	0	100%	0.9333
7UFH_NAG_D_2004	29%	68%	0.223	0.882	0.57	0.64	-	1	0	0	100%	0.9333
1TYE_NAG_D_1013	26%	64%	0.167	0.808	0.5	0.86	-	1	0	0	100%	0.9333
7UK9_NAG_D_2004	25%	78%	0.223	0.858	0.31	0.57	-	-	0	0	100%	0.9333
1OC7_NAG_A_500	100%	60%	0.04	0.991	0.61	0.9	-	1	0	0	100%	0.9333
1OC6_NAG_A_500	100%	67%	0.041	0.988	0.46	0.8	-	1	0	0	100%	0.9333
1UWC_NAG_A_262	100%	54%	0.046	0.99	0.81	0.95	-	-	0	0	100%	0.9333
6ZE6_NAG_B_703	99%	52%	0.044	0.984	0.78	1.07	-	2	0	0	100%	0.8667
6ZE2_NAG_B_704	99%	56%	0.042	0.979	0.73	0.95	-	1	0	0	100%	0.9333

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.