Ligand validation:2PAM

TYD: THYMIDINE-5'-DIPHOSPHATE

TYD is a Ligand Of Interest in 2PAM designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
2PAM_TYD_B_140	84%	12%	0.106	0.968	1.31	2.92	2	2	1	0	100%	1
2PAM_TYD_A_140	79%	15%	0.111	0.957	1.38	2.58	2	1	0	0	100%	1
2PAE_TYD_A_140	83%	12%	0.101	0.961	1.35	2.87	2	1	2	0	100%	1
2PAK_TYD_B_140	76%	12%	0.101	0.937	1.33	2.86	2	3	2	0	100%	1
3OTI_TYD_B_377	99%	25%	0.054	0.987	1.12	2.08	1	2	0	0	100%	1
3EVO_TYD_A_160	99%	34%	0.057	0.988	1	1.68	1	3	0	0	100%	1
5WXK_TYD_A_401	99%	35%	0.06	0.987	0.99	1.64	1	2	0	0	100%	1
3EM1_TYD_B_143	98%	34%	0.059	0.984	1.01	1.71	1	3	0	0	100%	1
1LVW_TYD_C_3006	98%	9%	0.057	0.978	1.68	2.93	5	3	0	0	100%	1

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.