GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 2NG1 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 2NG1_GDP_A_900 | 96% | 47% | 0.053 | 0.967 | 1.2 | 0.75 | 2 | - | 0 | 0 | 100% | 1 |
| 2CNW_GDP_A_1001 | 100% | 24% | 0.014 | 0.998 | 1.16 | 1.84 | 3 | 9 | 0 | 0 | 100% | 1 |
| 2C03_GDP_B_1297 | 99% | 33% | 0.042 | 0.987 | 1.19 | 1.36 | 4 | 5 | 0 | 0 | 100% | 1 |
| 1O87_GDP_A_1299 | 96% | 18% | 0.056 | 0.974 | 1.72 | 1.75 | 8 | 10 | 0 | 0 | 100% | 1 |
| 1NG1_GDP_A_900 | 91% | 52% | 0.069 | 0.961 | 1.06 | 0.69 | 2 | - | 0 | 0 | 100% | 1 |
| 1TVK_GDP_B_1500 | 100% | 32% | 0.012 | 0.999 | 1.95 | 0.71 | 1 | 1 | 8 | 0 | 100% | 1 |
| 3ZY3_GDP_A_1384 | 100% | 26% | 0.014 | 0.998 | 1.13 | 1.74 | 3 | 8 | 1 | 0 | 100% | 1 |
| 5V9L_GDP_A_201 | 100% | 35% | 0.014 | 0.998 | 1.01 | 1.42 | 1 | 5 | 0 | 0 | 100% | 1 |
| 6EG8_GDP_K_401 | 100% | 25% | 0.015 | 0.999 | 1.16 | 1.76 | 3 | 7 | 0 | 0 | 100% | 1 |
| 4EKC_GDP_A_400 | 100% | 24% | 0.016 | 0.999 | 1.2 | 1.82 | 4 | 6 | 3 | 0 | 100% | 1 |
