XYS: alpha-D-xylopyranose
XYS is a Ligand Of Interest in 2BFG designated by the RCSB
| Best-fitted instance in this entry | |
| Other instances in this entry |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2BFG_XYS_H_1504 | 37% | 9% | 0.151 | 0.865 | 2.25 | 2.21 | 3 | 5 | 2 | 0 | 90% | 1 |
| 2BFG_XYS_A_1507 | 34% | 18% | 0.2 | 0.902 | 1.89 | 1.64 | 3 | 2 | 1 | 0 | 90% | 0.3 |
| 2BFG_XYS_B_1504 | 31% | 15% | 0.164 | 0.851 | 2.16 | 1.66 | 4 | 2 | 1 | 0 | 90% | 1 |
| 2BFG_XYS_D_1507 | 27% | 14% | 0.217 | 0.883 | 1.92 | 1.96 | 2 | 4 | 1 | 0 | 90% | 0.4 |
| 2BFG_XYS_F_1504 | 26% | 8% | 0.172 | 0.832 | 2.31 | 2.33 | 4 | 2 | 0 | 0 | 90% | 1 |
| 2BFG_XYS_E_1504 | 24% | 8% | 0.177 | 0.822 | 2.2 | 2.43 | 4 | 3 | 0 | 0 | 90% | 1 |
| 2BFG_XYS_G_1504 | 23% | 9% | 0.17 | 0.807 | 2.03 | 2.35 | 4 | 4 | 1 | 0 | 90% | 1 |
| 2BFG_XYS_C_1504 | 12% | 10% | 0.234 | 0.778 | 2.22 | 2.15 | 4 | 2 | 1 | 0 | 90% | 1 |
| 5A03_XYS_B_1342 | 92% | 33% | 0.063 | 0.953 | 1.68 | 1.01 | 1 | 1 | 0 | 0 | 100% | 1 |
| 8OZ1_XYS_A_804 | 91% | 61% | 0.064 | 0.967 | 0.83 | 0.66 | - | - | 0 | 0 | 90% | 1 |
| 8BQA_XYS_AAA_402 | 88% | 34% | 0.058 | 0.951 | 0.83 | 1.77 | - | 3 | 0 | 0 | 90% | 1 |
| 7PLC_XYS_C_302 | 85% | 63% | 0.096 | 0.961 | 0.55 | 0.87 | - | 1 | 1 | 0 | 100% | 1 |
| 2CDC_XYS_D_1371 | 82% | 48% | 0.1 | 0.954 | 1.01 | 0.99 | 1 | 1 | 0 | 0 | 100% | 1 |
