GDU: GALACTOSE-URIDINE-5'-DIPHOSPHATE
GDU is a Ligand Of Interest in 1YRO designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 1YRO_GDU_D_528 | 90% | 17% | 0.075 | 0.963 | 1.67 | 1.84 | 6 | 9 | 4 | 0 | 100% | 1 |
| 1YRO_GDU_B_403 | 89% | 21% | 0.07 | 0.955 | 1.4 | 1.81 | 5 | 7 | 1 | 0 | 100% | 1 |
| 1TVY_GDU_B_806 | 96% | 21% | 0.056 | 0.973 | 1.71 | 1.52 | 5 | 7 | 2 | 0 | 100% | 1 |
| 2FYC_GDU_D_528 | 95% | 22% | 0.055 | 0.968 | 1.57 | 1.59 | 5 | 8 | 0 | 0 | 100% | 1 |
| 1TW1_GDU_A_2 | 95% | 14% | 0.058 | 0.97 | 1.73 | 2.03 | 5 | 16 | 2 | 1 | 100% | 1 |
| 1O0R_GDU_A_404 | 92% | 10% | 0.067 | 0.966 | 1.95 | 2.22 | 10 | 13 | 0 | 0 | 100% | 1 |
| 1FR8_GDU_B_403 | 47% | 4% | 0.1 | 0.894 | 2.43 | 3.02 | 2 | 14 | 3 | 0 | 69% | 1 |
| 4LW3_GDU_A_402 | 100% | 11% | 0.023 | 0.996 | 2.61 | 1.49 | 16 | 9 | 0 | 0 | 100% | 1 |
| 3UKP_GDU_D_602 | 100% | 13% | 0.031 | 0.993 | 2.02 | 1.84 | 10 | 13 | 5 | 0 | 100% | 1 |
| 3UKF_GDU_H_802 | 99% | 13% | 0.042 | 0.993 | 1.94 | 1.89 | 12 | 10 | 3 | 0 | 100% | 1 |
| 6GX0_GDU_A_402 | 99% | 36% | 0.038 | 0.987 | 1.15 | 1.25 | 3 | 9 | 0 | 0 | 100% | 0.5 |
| 5M7D_GDU_A_402 | 99% | 40% | 0.044 | 0.984 | 1.11 | 1.11 | 3 | 5 | 0 | 0 | 100% | 1 |
