UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 1YRO designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 1YRO_UDP_B_405 | 5% | 33% | 0.23 | 0.63 | 1.18 | 1.56 | 1 | 8 | 0 | 0 | 100% | 1 |
| 1YRO_UDP_D_530 | 3% | 33% | 0.247 | 0.578 | 1.21 | 1.52 | 1 | 6 | 0 | 0 | 100% | 1 |
| 1NKH_UDP_D_810 | 95% | 20% | 0.077 | 0.979 | 1.9 | 1.67 | 5 | 5 | 3 | 0 | 100% | 1 |
| 2FYD_UDP_D_528 | 83% | 23% | 0.102 | 0.962 | 1.55 | 1.79 | 4 | 11 | 2 | 0 | 100% | 1 |
| 1PZY_UDP_B_407 | 46% | 38% | 0.162 | 0.897 | 1.33 | 1.15 | 3 | 2 | 1 | 0 | 100% | 0.952 |
| 2FYC_UDP_B_405 | 21% | 34% | 0.189 | 0.8 | 1.21 | 1.47 | 2 | 8 | 0 | 0 | 100% | 1 |
| 1NHE_UDP_D_810 | 12% | 18% | 0.272 | 0.802 | 2.12 | 1.59 | 5 | 5 | 5 | 0 | 100% | 1 |
| 4PHR_UDP_A_301 | 100% | 43% | 0.042 | 0.989 | 0.84 | 1.41 | - | 4 | 0 | 0 | 100% | 1 |
| 2B69_UDP_A_900 | 100% | 47% | 0.046 | 0.992 | 1.19 | 0.9 | 2 | 1 | 0 | 0 | 100% | 1 |
| 1GX4_UDP_B_401 | 100% | 30% | 0.047 | 0.992 | 1.85 | 1.09 | 3 | 4 | 0 | 0 | 100% | 1 |
| 5GY7_UDP_B_401 | 99% | 45% | 0.047 | 0.987 | 0.98 | 1.18 | 1 | 5 | 0 | 0 | 100% | 1 |
| 3U2V_UDP_B_270 | 99% | 35% | 0.049 | 0.989 | 1.12 | 1.52 | 2 | 6 | 0 | 0 | 100% | 1 |
