GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 1Y3A designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 1Y3A_GDP_D_358 | 67% | 12% | 0.105 | 0.914 | 1.61 | 2.35 | 4 | 10 | 3 | 0 | 100% | 1 |
| 1Y3A_GDP_B_356 | 63% | 11% | 0.115 | 0.91 | 1.71 | 2.38 | 6 | 10 | 2 | 0 | 100% | 1 |
| 1Y3A_GDP_C_357 | 61% | 13% | 0.113 | 0.901 | 1.47 | 2.35 | 3 | 10 | 3 | 0 | 100% | 1 |
| 1Y3A_GDP_A_355 | 61% | 13% | 0.121 | 0.909 | 1.49 | 2.34 | 3 | 10 | 2 | 0 | 100% | 1 |
| 1AS2_GDP_A_355 | 100% | 24% | 0.033 | 0.99 | 1.32 | 1.69 | 3 | 10 | 0 | 0 | 100% | 1 |
| 2XNS_GDP_A_1348 | 100% | 25% | 0.037 | 0.992 | 1.14 | 1.78 | 3 | 7 | 5 | 0 | 100% | 1 |
| 4PAN_GDP_A_401 | 99% | 24% | 0.037 | 0.989 | 1.29 | 1.7 | 4 | 7 | 0 | 0 | 100% | 1 |
| 1AS3_GDP_A_355 | 99% | 45% | 0.037 | 0.987 | 1.21 | 0.83 | 4 | 1 | 3 | 0 | 100% | 1 |
| 3UMR_GDP_A_400 | 99% | 29% | 0.039 | 0.987 | 1.16 | 1.59 | 2 | 7 | 0 | 0 | 100% | 1 |
| 1TVK_GDP_B_1500 | 100% | 32% | 0.012 | 0.999 | 1.95 | 0.71 | 1 | 1 | 8 | 0 | 100% | 1 |
| 2CNW_GDP_A_1001 | 100% | 24% | 0.014 | 0.998 | 1.16 | 1.84 | 3 | 9 | 0 | 0 | 100% | 1 |
| 3ZY3_GDP_A_1384 | 100% | 26% | 0.014 | 0.998 | 1.13 | 1.74 | 3 | 8 | 1 | 0 | 100% | 1 |
| 5V9L_GDP_A_201 | 100% | 35% | 0.014 | 0.998 | 1.01 | 1.42 | 1 | 5 | 0 | 0 | 100% | 1 |
| 6EG8_GDP_K_401 | 100% | 25% | 0.015 | 0.999 | 1.16 | 1.76 | 3 | 7 | 0 | 0 | 100% | 1 |
