Ligand validation:1VYS

TNF: PICRIC ACID

TNF is a Ligand Of Interest in 1VYS designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
1VYS_TNF_X_500	48%	6%	0.23	0.974	2.78	2.48	5	5	0	0	100%	0.5
1VYP_TNF_X_500	15%	12%	0.206	0.769	2.79	1.52	6	3	2	0	100%	1
1VYR_TNF_A_1402	4%	4%	0.345	0.724	2.73	3.1	5	4	2	0	100%	0.2775
5K1U_TNF_A_401	71%	52%	0.117	0.938	0.53	1.33	-	3	1	0	100%	0.69
5K1W_TNF_A_402	59%	47%	0.134	0.916	0.77	1.29	-	2	1	0	100%	1
4JEW_TNF_A_507	23%	21%	0.2	0.82	1.81	1.65	4	2	0	0	100%	1
4JEX_TNF_B_508	8%	20%	0.188	0.652	1.93	1.64	4	2	0	0	100%	0.7

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.