Ligand validation:1TYP

SPD: SPERMIDINE

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
1TYP_SPD_A_496	44%	26%	0.13	0.906	0.32	2.64	-	3	7	0	100%	1
1TYP_SPD_B_496	35%	51%	0.136	0.87	0.35	1.36	-	1	0	0	100%	1
1TYP_SPD_B_498	23%	10%	0.143	0.811	1.71	2.51	2	3	1	0	100%	1
1TYP_SPD_A_498	2%	46%	0.175	0.558	0.94	1.07	-	-	1	0	100%	1
3C6K_SPD_A_501	98%	52%	0.031	0.993	0.37	1.31	-	1	1	0	100%	1
7OYW_SPD_B_401	97%	56%	0.036	0.987	0.47	1.01	-	1	0	0	100%	0.5
7CI1_SPD_A_401	97%	48%	0.04	0.993	0.7	1.17	-	-	1	0	100%	1
9VYL_SPD_A_303	94%	15%	0.045	0.984	1.05	2.63	1	3	2	0	100%	1
3ICE_SPD_G_101	93%	65%	0.049	0.99	0.62	0.53	-	-	5	0	100%	1

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.