Ligand validation:1RD8

NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose

NAG is a Ligand Of Interest in 1RD8 designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
1RD8_NAG_B_183	6%	46%	0.401	0.831	0.56	1.53	-	4	2	1	100%	0.9333
1RD8_NAG_A_1	5%	28%	0.413	0.828	1.02	1.99	1	6	0	1	100%	0.9333
1RD8_NAG_E_330	5%	14%	0.297	0.692	1.46	2.56	3	7	0	1	100%	0.9333
1RD8_NAG_C_330	2%	27%	0.462	0.758	1.02	2.03	1	7	0	1	100%	0.9333
1RD8_NAG_A_2	2%	43%	0.337	0.614	0.55	1.66	-	3	0	1	100%	0.9333
1RD8_NAG_C_335	0%	45%	0.425	0.479	0.73	1.4	-	3	0	0	100%	0.9333
5UG0_NAG_A_402	77%	44%	0.087	0.925	0.4	1.78	-	2	0	0	100%	0.9333
5W6G_NAG_A_404	49%	60%	0.149	0.895	0.31	1.19	-	2	0	0	100%	0.9333
6FYT_NAG_A_511	42%	85%	0.163	0.882	0.28	0.46	-	-	0	0	100%	0.9333
2WRG_NAG_J_1328	41%	27%	0.24	0.959	0.64	2.44	-	6	3	0	100%	1
3GBN_NAG_A_330	37%	46%	0.206	0.904	0.72	1.4	1	1	1	0	100%	0.9333
1OC7_NAG_A_500	100%	60%	0.04	0.991	0.61	0.9	-	1	0	0	100%	0.9333
1OC6_NAG_A_500	100%	67%	0.041	0.988	0.46	0.8	-	1	0	0	100%	0.9333
1UWC_NAG_A_262	100%	54%	0.046	0.99	0.81	0.95	-	-	0	0	100%	0.9333
6ZE6_NAG_B_703	99%	52%	0.044	0.984	0.78	1.07	-	2	0	0	100%	0.8667
6ZE2_NAG_B_704	99%	56%	0.042	0.979	0.73	0.95	-	1	0	0	100%	0.9333

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.