TYD: THYMIDINE-5'-DIPHOSPHATE
TYD is a Ligand Of Interest in 1LVW designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 1LVW_TYD_C_3006 | 97% | 7% | 0.057 | 0.978 | 1.68 | 2.93 | 5 | 3 | 0 | 0 | 100% | 1 |
| 1LVW_TYD_D_3008 | 94% | 8% | 0.064 | 0.972 | 1.58 | 2.96 | 5 | 2 | 0 | 0 | 100% | 1 |
| 1LVW_TYD_A_3002 | 92% | 8% | 0.083 | 0.981 | 1.64 | 2.88 | 5 | 1 | 0 | 0 | 100% | 1 |
| 1LVW_TYD_B_3004 | 89% | 8% | 0.083 | 0.968 | 1.56 | 2.98 | 6 | 2 | 0 | 0 | 100% | 1 |
| 1LVW_TYD_B_3003 | 42% | 8% | 0.128 | 0.846 | 1.53 | 3.01 | 4 | 3 | 2 | 0 | 100% | 1 |
| 1LVW_TYD_C_3005 | 35% | 7% | 0.15 | 0.837 | 1.58 | 3.11 | 6 | 4 | 2 | 0 | 100% | 1 |
| 1LVW_TYD_A_3001 | 32% | 7% | 0.154 | 0.83 | 1.57 | 3.02 | 6 | 3 | 4 | 0 | 100% | 1 |
| 1LVW_TYD_D_3007 | 5% | 7% | 0.221 | 0.648 | 1.63 | 3.02 | 7 | 3 | 3 | 0 | 100% | 1 |
| 3OTI_TYD_B_377 | 98% | 21% | 0.054 | 0.987 | 1.12 | 2.08 | 1 | 2 | 0 | 0 | 100% | 1 |
| 3EVO_TYD_A_160 | 98% | 30% | 0.057 | 0.988 | 1 | 1.68 | 1 | 3 | 0 | 0 | 100% | 1 |
| 5WXK_TYD_A_401 | 97% | 31% | 0.06 | 0.987 | 0.99 | 1.64 | 1 | 2 | 0 | 0 | 100% | 1 |
| 3EM1_TYD_B_143 | 97% | 29% | 0.059 | 0.984 | 1.01 | 1.71 | 1 | 3 | 0 | 0 | 100% | 1 |
| 3RSC_TYD_A_397 | 97% | 37% | 0.055 | 0.977 | 0.74 | 1.61 | 1 | 3 | 0 | 0 | 100% | 1 |
