UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 1JIV designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 1JIV_UDP_A_353 | 90% | 66% | 0.097 | 0.982 | 0.57 | 0.72 | - | 1 | 0 | 0 | 100% | 1 |
| 1SXQ_UDP_A_400 | 99% | 48% | 0.053 | 0.986 | 1.03 | 1 | 1 | 1 | 0 | 0 | 100% | 1 |
| 1JIX_UDP_A_500 | 98% | 66% | 0.059 | 0.984 | 0.59 | 0.68 | - | 1 | 0 | 0 | 100% | 1 |
| 1JG6_UDP_A_400 | 97% | 65% | 0.062 | 0.979 | 0.57 | 0.74 | - | 1 | 0 | 0 | 100% | 1 |
| 1NVK_UDP_A_700 | 97% | 78% | 0.066 | 0.983 | 0.41 | 0.48 | - | - | 0 | 0 | 100% | 1 |
| 1C3J_UDP_A_353 | 97% | 37% | 0.071 | 0.986 | 1.53 | 1.05 | 6 | 1 | 0 | 0 | 100% | 1 |
| 4PHR_UDP_A_301 | 100% | 43% | 0.042 | 0.989 | 0.84 | 1.41 | - | 4 | 0 | 0 | 100% | 1 |
| 2B69_UDP_A_900 | 100% | 47% | 0.046 | 0.992 | 1.19 | 0.9 | 2 | 1 | 0 | 0 | 100% | 1 |
| 1GX4_UDP_A_401 | 100% | 20% | 0.046 | 0.991 | 2.39 | 1.19 | 4 | 3 | 0 | 0 | 100% | 1 |
| 5GY7_UDP_B_401 | 99% | 45% | 0.047 | 0.987 | 0.98 | 1.18 | 1 | 5 | 0 | 0 | 100% | 1 |
| 3U2V_UDP_B_270 | 99% | 35% | 0.049 | 0.989 | 1.12 | 1.52 | 2 | 6 | 0 | 0 | 100% | 1 |
