Ligand validation:1AVD

NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose

NAG is a Ligand Of Interest in 1AVD designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
1AVD_NAG_A_600	29%	39%	0.192	0.851	0.97	1.49	1	4	0	0	100%	0.8
5IRW_NAG_A_201	72%	55%	0.116	0.94	0.8	0.91	-	-	1	0	100%	0.9333
3VHM_NAG_D_1125	71%	13%	0.107	0.928	1.37	2.71	2	3	5	0	100%	0.9333
5IRU_NAG_A_201	70%	63%	0.115	0.934	0.71	0.68	-	-	0	0	100%	0.9333
5MYQ_NAG_A_302	65%	30%	0.111	0.913	0.82	2.05	-	1	0	0	100%	0.9333
3VHH_NAG_D_1125	52%	21%	0.142	0.901	1.33	2.11	3	4	3	0	100%	0.9333
1OC7_NAG_A_500	100%	60%	0.04	0.991	0.61	0.9	-	1	0	0	100%	0.9333
1OC6_NAG_A_500	100%	67%	0.041	0.988	0.46	0.8	-	1	0	0	100%	0.9333
1UWC_NAG_A_262	100%	54%	0.046	0.99	0.81	0.95	-	-	0	0	100%	0.9333
6ZE6_NAG_B_703	99%	52%	0.044	0.984	0.78	1.07	-	2	0	0	100%	0.8667
6ZE2_NAG_B_704	99%	56%	0.042	0.979	0.73	0.95	-	1	0	0	100%	0.9333

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.