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Motif1-Motif2-3T left-right hybrid G-quadruplex dimer in the P1211 space group
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 9CIY left-right hybrid G-quadruplex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 285 0.08 M Magnesium Acetate, 0.05 M Sodium Cacodylate trihydrate, pH 6.0, 28% Polyethylene Glycol 4000
Crystal Properties Matthews coefficient Solvent content 2.02 39.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 30.92 α = 90 b = 61.82 β = 106.421 c = 36.987 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 183 PIXEL DECTRIS EIGER X 16M 2025-04-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-E 0.9792 APS 24-ID-E
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.63 61.82 98.2 0.082 0.034 0.997 11 6.7 16380
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.63 1.73 95 1.16 0.625 1.6 6.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.63 35.48 1.33 16340 794 97.86 0.1741 0.172 0.1726 0.217 0.2177 35.83
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 37.6226 f_angle_d 1.6631 f_chiral_restr 0.074 f_plane_restr 0.0166 f_bond_d 0.0158
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms Nucleic Acid Atoms 1138 Solvent Atoms 82 Heterogen Atoms 65
Software Software Software Name Purpose Coot model building PHASER phasing RAPD data scaling PHENIX refinement