9RQU | pdb_00009rqu

X-RAY DIFFRACTION

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION		293	The best crystals of NbREM1.1-97-208 grew from protein solution concentrated to 11.07mg/ml 0.1M HEPES PH 7.5; 0.2M ammonium acetate; 25% PEG3350 in the presence of 0.5 % w/v n-Octyl-beta-D-glucoside. SeMet crystals grew from the same conditions.

Crystal Properties
Matthews coefficient	Solvent content
3.06	59.76

Symmetry
Space Group	P 1 21 1

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2021-01-04	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SSRF BEAMLINE BL18U1	0.97853	SSRF	BL18U1

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.5	78.51	99.8	0.999	13.9	6.8		22997

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.5	2.6			0.934

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	SAD	FREE R-VALUE	2.5	78.509	22976	1102	99.766	0.248	0.2456	0.2496	0.2914	0.2943	81.868

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
7.678		-1.27	3.245		-10.451

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	32.762
r_dihedral_angle_3_deg	18.077
r_lrange_it	16.908
r_scangle_it	14.711
r_mcangle_it	13.342
r_dihedral_angle_4_deg	10.911
r_scbond_it	10.104
r_mcbond_it	8.91
r_dihedral_angle_1_deg	3.614
r_angle_refined_deg	1.088

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	32.762
r_dihedral_angle_3_deg	18.077
r_lrange_it	16.908
r_scangle_it	14.711
r_mcangle_it	13.342
r_dihedral_angle_4_deg	10.911
r_scbond_it	10.104
r_mcbond_it	8.91
r_dihedral_angle_1_deg	3.614
r_angle_refined_deg	1.088
r_nbtor_refined	0.277
r_symmetry_nbd_refined	0.205
r_symmetry_xyhbond_nbd_refined	0.198
r_nbd_refined	0.191
r_xyhbond_nbd_refined	0.184
r_ncsr_local_group_6	0.123
r_ncsr_local_group_3	0.121
r_ncsr_local_group_4	0.118
r_ncsr_local_group_2	0.116
r_ncsr_local_group_1	0.11
r_ncsr_local_group_5	0.078
r_chiral_restr	0.07
r_bond_refined_d	0.005
r_gen_planes_refined	0.005

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	3702
Nucleic Acid Atoms
Solvent Atoms	77
Heterogen Atoms	17

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.