9QPF | pdb_00009qpf

Solution structure of Sox2 DBD

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-1H NOESY	0.25 mM [U-13C; U-15N] Sox2-DBD, 135 mM potassium chloride, 20 mM TRIS, 15 mM sodium chloride, 0.01 % v/v sodium azide	90% H2O/10% D2O	150 mM	7.30	AMBIENT bar	293	Bruker AVANCE NEO 1200
2	3D 1H-15N NOESY	0.25 mM [U-13C; U-15N] Sox2-DBD, 135 mM potassium chloride, 20 mM TRIS, 15 mM sodium chloride, 0.01 % v/v sodium azide	90% H2O/10% D2O	150 mM	7.30	AMBIENT bar	293	Bruker AVANCE NEO 1200
3	3D 1H-13C NOESY	0.25 mM [U-13C; U-15N] Sox2-DBD, 135 mM potassium chloride, 20 mM TRIS, 15 mM sodium chloride, 0.01 % v/v sodium azide	90% H2O/10% D2O	150 mM	7.30	AMBIENT bar	293	Bruker AVANCE III 850
4	2D 1H-15N HSQC	0.25 mM [U-13C; U-15N] Sox2-DBD, 135 mM potassium chloride, 20 mM TRIS, 15 mM sodium chloride, 0.01 % v/v sodium azide, 5 % v/v pentaethylene glycol monodecyl/n-Hexanol	90% H2O/10% D2O	150 mM	7.30	AMBIENT bar	293	Bruker AVANCE III 600
5	2D 1H-15N HSQC	0.25 mM [U-13C; U-15N] Sox2-DBD, 135 mM potassium chloride, 20 mM TRIS, 15 mM sodium chloride, 0.01 % v/v sodium azide	90% H2O/10% D2O	150 mM	7.30	AMBIENT bar	293	Bruker AVANCE NEO 900
6	3D HNCACB	0.25 mM [U-13C; U-15N] Sox2-DBD, 135 mM potassium chloride, 20 mM TRIS, 15 mM sodium chloride, 0.01 % v/v sodium azide	90% H2O/10% D2O	150 mM	7.30	AMBIENT bar	293	Bruker AVANCE III 600

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE NEO	1200
2	Bruker	AVANCE NEO	900
3	Bruker	AVANCE III	600
4	Bruker	AVANCE III	850

NMR Refinement
Method	Details	Software
torsion angle dynamics		CYANA

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	200
Conformers Submitted Total Number	20
Representative Model	1 (target function)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	structure calculation	CYANA	3.98.15	Guntert, Mumenthaler and Wuthrich
2	chemical shift assignment	CYANA	3.98.15	Guntert, Mumenthaler and Wuthrich
6	chemical shift assignment	Poky		Manthey, Tonelli, Clos II, Rahimi, Markley and Lee
3	peak picking	Poky		Manthey, Tonelli, Clos II, Rahimi, Markley and Lee
4	data analysis	Poky		Manthey, Tonelli, Clos II, Rahimi, Markley and Lee