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Solution structure of Sox2 DBD
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-1H NOESY 0.25 mM [U-13C; U-15N] Sox2-DBD, 135 mM potassium chloride, 20 mM TRIS, 15 mM sodium chloride, 0.01 % v/v sodium azide 90% H2O/10% D2O 150 mM 7.30 AMBIENT bar 293 Bruker AVANCE NEO 1200 2 3D 1H-15N NOESY 0.25 mM [U-13C; U-15N] Sox2-DBD, 135 mM potassium chloride, 20 mM TRIS, 15 mM sodium chloride, 0.01 % v/v sodium azide 90% H2O/10% D2O 150 mM 7.30 AMBIENT bar 293 Bruker AVANCE NEO 1200 3 3D 1H-13C NOESY 0.25 mM [U-13C; U-15N] Sox2-DBD, 135 mM potassium chloride, 20 mM TRIS, 15 mM sodium chloride, 0.01 % v/v sodium azide 90% H2O/10% D2O 150 mM 7.30 AMBIENT bar 293 Bruker AVANCE III 850 4 2D 1H-15N HSQC 0.25 mM [U-13C; U-15N] Sox2-DBD, 135 mM potassium chloride, 20 mM TRIS, 15 mM sodium chloride, 0.01 % v/v sodium azide, 5 % v/v pentaethylene glycol monodecyl/n-Hexanol 90% H2O/10% D2O 150 mM 7.30 AMBIENT bar 293 Bruker AVANCE III 600 5 2D 1H-15N HSQC 0.25 mM [U-13C; U-15N] Sox2-DBD, 135 mM potassium chloride, 20 mM TRIS, 15 mM sodium chloride, 0.01 % v/v sodium azide 90% H2O/10% D2O 150 mM 7.30 AMBIENT bar 293 Bruker AVANCE NEO 900 6 3D HNCACB 0.25 mM [U-13C; U-15N] Sox2-DBD, 135 mM potassium chloride, 20 mM TRIS, 15 mM sodium chloride, 0.01 % v/v sodium azide 90% H2O/10% D2O 150 mM 7.30 AMBIENT bar 293 Bruker AVANCE III 600
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE NEO 1200 2 Bruker AVANCE NEO 900 3 Bruker AVANCE III 600 4 Bruker AVANCE III 850
NMR Refinement Method Details Software torsion angle dynamics CYANA
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 200 Conformers Submitted Total Number 20 Representative Model 1 (target function)
Computation: NMR Software # Classification Version Software Name Author 1 structure calculation CYANA 3.98.15 Guntert, Mumenthaler and Wuthrich 2 chemical shift assignment CYANA 3.98.15 Guntert, Mumenthaler and Wuthrich 6 chemical shift assignment Poky Manthey, Tonelli, Clos II, Rahimi, Markley and Lee 3 peak picking Poky Manthey, Tonelli, Clos II, Rahimi, Markley and Lee 4 data analysis Poky Manthey, Tonelli, Clos II, Rahimi, Markley and Lee