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EGFR wild type in complex with 25328
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 8SC7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.6 293 25 mM HEPES pH 8, 150 mM NaCl, 10 % glycerol, 1 mM DTT 85mM Tris pH 7.6, 140 mM acetate, 23.5 % Polyethylene glycol 4,000, 18% glycerol
Crystal Properties Matthews coefficient Solvent content 3.37 63.52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 144.696 α = 90 b = 144.696 β = 90 c = 144.696 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 173 PIXEL DECTRIS PILATUS 6M 2019-12-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.92 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.16 45.799 100 0.029 1 15 1.9 8781
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.16 3.38 0.4 0.712 1.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 3.163 45.799 8781 432 99.954 0.214 0.2125 0.2131 0.2564 0.2532 115.876
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 24.615 r_dihedral_angle_2_deg 22.843 r_lrange_it 18.769 r_lrange_other 18.768 r_dihedral_angle_6_deg 16.365 r_scangle_it 13.508 r_scangle_other 13.504 r_mcangle_it 12.633 r_mcangle_other 12.632 r_scbond_it 9.293
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 24.615 r_dihedral_angle_2_deg 22.843 r_lrange_it 18.769 r_lrange_other 18.768 r_dihedral_angle_6_deg 16.365 r_scangle_it 13.508 r_scangle_other 13.504 r_mcangle_it 12.633 r_mcangle_other 12.632 r_scbond_it 9.293 r_scbond_other 9.29 r_mcbond_it 9.007 r_mcbond_other 8.982 r_dihedral_angle_1_deg 6.372 r_angle_refined_deg 1.343 r_angle_other_deg 0.464 r_symmetry_xyhbond_nbd_refined 0.277 r_xyhbond_nbd_refined 0.262 r_symmetry_nbd_refined 0.258 r_nbd_refined 0.239 r_symmetry_nbd_other 0.231 r_nbd_other 0.21 r_nbtor_refined 0.194 r_symmetry_nbtor_other 0.092 r_chiral_restr 0.054 r_symmetry_xyhbond_nbd_other 0.039 r_bond_refined_d 0.006 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2363 Nucleic Acid Atoms Solvent Atoms 31 Heterogen Atoms 28
Software Software Software Name Purpose REFMAC refinement xia2 data reduction Aimless data scaling PHASER phasing