9H46 | pdb_00009h46

EGFR wild type in complex with 25328

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	8SC7

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	7.6	293	25 mM HEPES pH 8, 150 mM NaCl, 10 % glycerol, 1 mM DTT 85mM Tris pH 7.6, 140 mM acetate, 23.5 % Polyethylene glycol 4,000, 18% glycerol

Crystal Properties
Matthews coefficient	Solvent content
3.37	63.52

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 144.696	α = 90
b = 144.696	β = 90
c = 144.696	γ = 90

Symmetry
Space Group	I 2 3

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	173	PIXEL	DECTRIS PILATUS 6M		2019-12-05	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I03	0.92	Diamond	I03

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	3.16	45.799	100	0.029	1	15	1.9		8781

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	3.16	3.38			0.4	0.712	1.7

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	3.163	45.799	8781	432	99.954	0.214	0.2125	0.2131	0.2564	0.2532	115.876

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	24.615
r_dihedral_angle_2_deg	22.843
r_lrange_it	18.769
r_lrange_other	18.768
r_dihedral_angle_6_deg	16.365
r_scangle_it	13.508
r_scangle_other	13.504
r_mcangle_it	12.633
r_mcangle_other	12.632
r_scbond_it	9.293
r_scbond_other	9.29
r_mcbond_it	9.007
r_mcbond_other	8.982
r_dihedral_angle_1_deg	6.372
r_angle_refined_deg	1.343
r_angle_other_deg	0.464
r_symmetry_xyhbond_nbd_refined	0.277
r_xyhbond_nbd_refined	0.262
r_symmetry_nbd_refined	0.258
r_nbd_refined	0.239
r_symmetry_nbd_other	0.231
r_nbd_other	0.21
r_nbtor_refined	0.194
r_symmetry_nbtor_other	0.092
r_chiral_restr	0.054
r_symmetry_xyhbond_nbd_other	0.039
r_bond_refined_d	0.006
r_gen_planes_refined	0.006
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2363
Nucleic Acid Atoms
Solvent Atoms	31
Heterogen Atoms	28

Software

Software
Software Name	Purpose
REFMAC	refinement
xia2	data reduction
Aimless	data scaling
PHASER	phasing