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Crystal structure of p73 tetramerisation domain in complex with darpins 1800
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5HOB experimental model PDB 6FP7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293.15 30% PEG2000MME, 0.15M potassium bromide
Crystal Properties Matthews coefficient Solvent content 2.83 56.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.763 α = 90 b = 94.816 β = 90 c = 96.433 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2019-02-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 0.99999 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 48.22 99.9 0.053 0.06 0.022 0.999 15.1 7.5 17152
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.17 0.913 1.056 0.375 0.938 2 7.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.1 47.41 16349 799 99.81 0.2043 0.20224 0.2087 0.24782 0.2545 RANDOM 65.216
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.67 3.93 -3.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.252 r_dihedral_angle_3_deg 15.085 r_dihedral_angle_4_deg 13.501 r_long_range_B_refined 6.57 r_long_range_B_other 6.56 r_dihedral_angle_1_deg 5.622 r_scangle_other 4.099 r_mcangle_it 2.993 r_mcangle_other 2.992 r_scbond_it 2.803
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.252 r_dihedral_angle_3_deg 15.085 r_dihedral_angle_4_deg 13.501 r_long_range_B_refined 6.57 r_long_range_B_other 6.56 r_dihedral_angle_1_deg 5.622 r_scangle_other 4.099 r_mcangle_it 2.993 r_mcangle_other 2.992 r_scbond_it 2.803 r_scbond_other 2.801 r_mcbond_it 1.895 r_mcbond_other 1.893 r_angle_other_deg 1.243 r_angle_refined_deg 1.189 r_chiral_restr 0.058 r_bond_refined_d 0.007 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1696 Nucleic Acid Atoms Solvent Atoms 49 Heterogen Atoms 7
Software Software Software Name Purpose REFMAC refinement Aimless data scaling XDS data reduction PHASER phasing