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Crystal structure of Rv2242 regulator C-terminal fragment (161-414)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 SLOW COOLING 7.5 277 20 mM HEPES, pH7.5, 400 mM NaCl, 5% glycerol, 5 mM beta-mercaptoethanol, 400 mM imidazole, temperature 277K, slow cooling
Crystal Properties Matthews coefficient Solvent content 2.85 56.88
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.04 α = 90 b = 75.28 β = 90 c = 139.52 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2019-02-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 2 0.9786 SOLEIL PROXIMA 2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.027 48.378 99.7 0.073 0.732 22.81 13.4 21908
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.027 2.15 98.5 1.353 0.681 13.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.027 48.378 21908 1096 99.754 0.199 0.1964 0.2057 0.2543 0.2532 51.793
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.995 -0.834 -1.161
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 17.123 r_dihedral_angle_3_deg 17.098 r_dihedral_angle_2_deg 15.777 r_lrange_other 11.657 r_lrange_it 11.606 r_scangle_it 10.5 r_scangle_other 10.496 r_mcangle_other 8.045 r_mcangle_it 8.033 r_scbond_it 7.976
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 17.123 r_dihedral_angle_3_deg 17.098 r_dihedral_angle_2_deg 15.777 r_lrange_other 11.657 r_lrange_it 11.606 r_scangle_it 10.5 r_scangle_other 10.496 r_mcangle_other 8.045 r_mcangle_it 8.033 r_scbond_it 7.976 r_scbond_other 7.972 r_dihedral_angle_1_deg 7.114 r_mcbond_it 6.459 r_mcbond_other 6.448 r_angle_refined_deg 2.207 r_angle_other_deg 0.703 r_nbd_refined 0.244 r_nbd_other 0.211 r_symmetry_nbd_other 0.205 r_nbtor_refined 0.195 r_xyhbond_nbd_refined 0.177 r_symmetry_xyhbond_nbd_refined 0.134 r_symmetry_nbd_refined 0.12 r_chiral_restr 0.093 r_symmetry_nbtor_other 0.088 r_bond_refined_d 0.015 r_gen_planes_refined 0.012 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1787 Nucleic Acid Atoms Solvent Atoms 38 Heterogen Atoms 9
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling SHELXD phasing PHASER phasing MOLREP phasing