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A-SPECTRIN SH3 DOMAIN V9L, A11V, V23L, M25C, V46W, V53L and V58L MUTANT
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1SHG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 2.8M Ammonium Sulfate and 0.1M HEPES pH: 7.0
Crystal Properties Matthews coefficient Solvent content 2.54 51.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 31.694 α = 90 b = 36.949 β = 90 c = 65.327 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 80 PIXEL STFC Large Pixel Detector 2022-09-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC 0.97926 ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.337 32.664 100 0.072 0.998 16.4 12.7 18004
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.337 1.36 0.652 1.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.337 32.664 18003 909 100 0.143 0.141 0.1383 0.1748 0.1737 28.816
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.506 -0.251 1.757
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.808 r_dihedral_angle_3_deg 12.587 r_lrange_it 11.232 r_lrange_other 10.622 r_dihedral_angle_4_deg 10.222 r_scangle_it 10.113 r_scangle_other 10.085 r_scbond_other 8.11 r_scbond_it 8.109 r_rigid_bond_restr 7.616
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.808 r_dihedral_angle_3_deg 12.587 r_lrange_it 11.232 r_lrange_other 10.622 r_dihedral_angle_4_deg 10.222 r_scangle_it 10.113 r_scangle_other 10.085 r_scbond_other 8.11 r_scbond_it 8.109 r_rigid_bond_restr 7.616 r_dihedral_angle_1_deg 6.886 r_mcangle_it 6.505 r_mcangle_other 6.497 r_mcbond_it 4.485 r_mcbond_other 4.408 r_angle_refined_deg 1.94 r_angle_other_deg 1.45 r_nbd_other 0.278 r_xyhbond_nbd_refined 0.24 r_nbd_refined 0.218 r_symmetry_xyhbond_nbd_refined 0.202 r_symmetry_nbd_other 0.184 r_nbtor_refined 0.182 r_symmetry_nbd_refined 0.108 r_chiral_restr 0.104 r_symmetry_nbtor_other 0.083 r_bond_refined_d 0.014 r_gen_planes_refined 0.011 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 530 Nucleic Acid Atoms Solvent Atoms 95 Heterogen Atoms 11
Software Software Software Name Purpose REFMAC refinement autoPROC data reduction autoPROC data scaling PHASER phasing