9EYB | pdb_00009eyb

A-SPECTRIN SH3 DOMAIN V9L, A11V, V23L, M25C, V46W, V53L and V58L MUTANT

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	1SHG

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	7	293	2.8M Ammonium Sulfate and 0.1M HEPES pH: 7.0

Crystal Properties
Matthews coefficient	Solvent content
2.54	51.59

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 31.694	α = 90
b = 36.949	β = 90
c = 65.327	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	80	PIXEL	STFC Large Pixel Detector		2022-09-21	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ALBA BEAMLINE XALOC	0.97926	ALBA	XALOC

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.337	32.664	100	0.072	0.998	16.4	12.7		18004

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.337	1.36			0.652	1.4

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1.337	32.664	18003	909	100	0.143	0.141	0.1383	0.1748	0.1737	28.816

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-1.506			-0.251		1.757

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	37.808
r_dihedral_angle_3_deg	12.587
r_lrange_it	11.232
r_lrange_other	10.622
r_dihedral_angle_4_deg	10.222
r_scangle_it	10.113
r_scangle_other	10.085
r_scbond_other	8.11
r_scbond_it	8.109
r_rigid_bond_restr	7.616
r_dihedral_angle_1_deg	6.886
r_mcangle_it	6.505
r_mcangle_other	6.497
r_mcbond_it	4.485
r_mcbond_other	4.408
r_angle_refined_deg	1.94
r_angle_other_deg	1.45
r_nbd_other	0.278
r_xyhbond_nbd_refined	0.24
r_nbd_refined	0.218
r_symmetry_xyhbond_nbd_refined	0.202
r_symmetry_nbd_other	0.184
r_nbtor_refined	0.182
r_symmetry_nbd_refined	0.108
r_chiral_restr	0.104
r_symmetry_nbtor_other	0.083
r_bond_refined_d	0.014
r_gen_planes_refined	0.011
r_gen_planes_other	0.002
r_bond_other_d	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	530
Nucleic Acid Atoms
Solvent Atoms	95
Heterogen Atoms	11

Software

Software
Software Name	Purpose
REFMAC	refinement
autoPROC	data reduction
autoPROC	data scaling
PHASER	phasing