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SufS-SufU complex from Mycobacterium Tuberculosis
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model AlphaFold AF-P9WQ69 in silico model AlphaFold AF-O53156
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 292 Morpheus 0.1M Carboxylic acids
Morpheus Buffer System 1 PH6.5
Morpheus Precipitant mix 1
Crystal Properties Matthews coefficient Solvent content 2.55 51.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.799 α = 91.03 b = 73.616 β = 100.22 c = 76.349 γ = 110.02
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2022-07-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 0.9537 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 48.68 98 0.998 10.8 7.3 88203
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.04 91.9 0.808 2.5 7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 48.68 83738 4434 97.92 0.18058 0.17939 0.188 0.20272 0.2098 RANDOM 32.755
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 12.633 r_dihedral_angle_2_deg 8.781 r_dihedral_angle_1_deg 5.929 r_long_range_B_refined 4.46 r_long_range_B_other 4.405 r_scangle_other 3.191 r_mcangle_it 2.499 r_mcangle_other 2.499 r_scbond_it 1.974 r_scbond_other 1.974
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 12.633 r_dihedral_angle_2_deg 8.781 r_dihedral_angle_1_deg 5.929 r_long_range_B_refined 4.46 r_long_range_B_other 4.405 r_scangle_other 3.191 r_mcangle_it 2.499 r_mcangle_other 2.499 r_scbond_it 1.974 r_scbond_other 1.974 r_mcbond_it 1.605 r_mcbond_other 1.603 r_angle_refined_deg 1.009 r_angle_other_deg 0.356 r_chiral_restr 0.047 r_bond_refined_d 0.005 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8296 Nucleic Acid Atoms Solvent Atoms 336 Heterogen Atoms 14
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHENIX phasing