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Crystal structure of the N-terminal truncated AbiV (residues 24-201)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 295 0.2 M Lithium sulfate, 0.1 M TRIS pH 8.5, 30% (w/v) PEG 4000
Crystal Properties Matthews coefficient Solvent content 2.32 46.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.444 α = 90.96 b = 106.901 β = 89.95 c = 146.228 γ = 95.02
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2020-10-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.97931 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.64 146.21 92.9 0.089 0.106 0.055 0.998 8.1 3.5 122595
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.64 2.78 91.5 0.766 0.909 0.483 0.815 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.64 106.7 116552 6013 92.89 0.2275 0.22537 0.2289 0.26836 0.2683 RANDOM 75.437
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -5.01 0.47 -0.38 7.28 0.14 -2.47
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.317 r_dihedral_angle_4_deg 24.7 r_dihedral_angle_3_deg 20.896 r_long_range_B_refined 11.591 r_long_range_B_other 11.591 r_scangle_other 9.127 r_dihedral_angle_1_deg 6.634 r_mcangle_it 6.473 r_mcangle_other 6.473 r_scbond_it 5.435
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.317 r_dihedral_angle_4_deg 24.7 r_dihedral_angle_3_deg 20.896 r_long_range_B_refined 11.591 r_long_range_B_other 11.591 r_scangle_other 9.127 r_dihedral_angle_1_deg 6.634 r_mcangle_it 6.473 r_mcangle_other 6.473 r_scbond_it 5.435 r_scbond_other 5.391 r_mcbond_it 4.037 r_mcbond_other 4.037 r_angle_refined_deg 1.741 r_angle_other_deg 1.342 r_chiral_restr 0.078 r_bond_refined_d 0.011 r_gen_planes_refined 0.007 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 29942 Nucleic Acid Atoms Solvent Atoms 68 Heterogen Atoms 35
Software Software Software Name Purpose REFMAC refinement SCALA data scaling XDS data reduction MOLREP phasing