9B9G | pdb_00009b9g

Structure of the PI4KA complex bound to Calcineurin


ELECTRON MICROSCOPY

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 6BQ1 
experimental modelPDB 6NUC 

Refinement

RMS Deviations
KeyRefinement Restraint Deviation
f_dihedral_angle_d7.976
f_angle_d0.722
f_chiral_restr0.042
f_plane_restr0.004
f_bond_d0.003
Sample
PI4KA complex bound to Calcineurin
Specimen Preparation
Sample Aggregation StatePARTICLE
Vitrification InstrumentFEI VITROBOT MARK IV
Cryogen NameETHANE
Sample Vitrification DetailsBlot force -5, blot time 1 s
3D Reconstruction
Reconstruction MethodSINGLE PARTICLE
Number of Particles235760
Reported Resolution (Å)3.5
Resolution MethodFSC 0.143 CUT-OFF
Other Details
Refinement Type
Symmetry TypePOINT
Point SymmetryC2
Map-Model Fitting and Refinement
Id1 (6BQ1, 6NUC)
Refinement Space
Refinement Protocol
Refinement Target
Overall B Value
Fitting Procedure
Details
Data Acquisition
Detector TypeFEI FALCON IV (4k x 4k)
Electron Dose (electrons/Å**2)50
Imaging Experiment1
Date of Experiment
Temperature (Kelvin)
Microscope ModelTFS KRIOS
Minimum Defocus (nm)1000
Maximum Defocus (nm)2000
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS2.7
Imaging ModeBRIGHT FIELD
Specimen Holder ModelFEI TITAN KRIOS AUTOGRID HOLDER
Nominal Magnification165000
Calibrated Magnification
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)300
Imaging Details
EM Software
TaskSoftware PackageVersion
PARTICLE SELECTIONcryoSPARCv.4.2.1
IMAGE ACQUISITIONSerialEM
CTF CORRECTIONcryoSPARCv4.2.1
MODEL REFINEMENTPHENIX
INITIAL EULER ASSIGNMENTcryoSPARCv4.2.1
FINAL EULER ASSIGNMENTcryoSPARCv4.2.1
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION1181312Particles were picked using the cryoSPARC template picker