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S_SAD structure of HEWL using lossy compression data with a compression ratio of 422
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 298 1000 mM NaCl
100 mM NaAcetate pH 4.6
50 mM Glycerol
50 mM Ethylen Glycol
Drop= 1 uL + 1uL
Crystal Properties Matthews coefficient Solvent content 2.03 40
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.893 α = 90 b = 78.893 β = 90 c = 36.952 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M KB mirros 2023-11-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS-II BEAMLINE 17-ID-1 1.65 NSLS-II 17-ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.64 19.73 83.2 0.049 0.05 0.011 0.999 49.7 19.7 12280
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.64 1.67 0.113 0.148 0.093 0.934 5.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.65 19.73 11589 648 84.02 0.1628 0.1608 0.1608 0.2001 0.2 RANDOM 9.784
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.01 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.036 r_dihedral_angle_4_deg 20.07 r_dihedral_angle_3_deg 16.064 r_dihedral_angle_1_deg 6.492 r_angle_refined_deg 1.727 r_scbond_it 1.151 r_mcangle_it 1.135 r_mcbond_it 0.691 r_chiral_restr 0.112 r_bond_refined_d 0.022
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.036 r_dihedral_angle_4_deg 20.07 r_dihedral_angle_3_deg 16.064 r_dihedral_angle_1_deg 6.492 r_angle_refined_deg 1.727 r_scbond_it 1.151 r_mcangle_it 1.135 r_mcbond_it 0.691 r_chiral_restr 0.112 r_bond_refined_d 0.022 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1001 Nucleic Acid Atoms Solvent Atoms 119 Heterogen Atoms 28
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction Aimless data scaling SHELXDE phasing