Structure of AT118-R nanobody in complex with the angiotensin II type I receptor bound to L-162,313
ELECTRON MICROSCOPY
Refinement
| RMS Deviations | |
|---|---|
| Key | Refinement Restraint Deviation |
| f_dihedral_angle_d | 7.676 |
| f_angle_d | 0.564 |
| f_chiral_restr | 0.04 |
| f_bond_d | 0.004 |
| f_plane_restr | 0.004 |
| Sample |
|---|
| Structure of AT118-R Nanobody in Complex with the Angiotensin II Type I Receptor bound to L-162,313 |
| Sample Components |
| AT118-R nanobody fused to Type-1 angiotensin II receptor with Soluble cytochrome b562 insertion |
| BAG2 Anti-BRIL Fab |
| Specimen Preparation | |
|---|---|
| Sample Aggregation State | PARTICLE |
| Vitrification Instrument | |
| Cryogen Name | ETHANE |
| Sample Vitrification Details | |
| 3D Reconstruction | |
|---|---|
| Reconstruction Method | SINGLE PARTICLE |
| Number of Particles | 464275 |
| Reported Resolution (Å) | 3.2 |
| Resolution Method | FSC 0.143 CUT-OFF |
| Other Details | |
| Refinement Type | |
| Symmetry Type | POINT |
| Number of Particles | 464275 |
| Reported Resolution (Å) | 3.2 |
| Resolution Method | FSC 0.143 CUT-OFF |
| Other Details | |
| Refinement Type | |
| Symmetry Type | POINT |
| Number of Particles | 464275 |
| Reported Resolution (Å) | 3.2 |
| Resolution Method | FSC 0.143 CUT-OFF |
| Other Details | |
| Refinement Type | |
| Symmetry Type | POINT |
| Number of Particles | 464275 |
| Reported Resolution (Å) | 3.2 |
| Resolution Method | FSC 0.143 CUT-OFF |
| Other Details | |
| Refinement Type | |
| Symmetry Type | POINT |
| Map-Model Fitting and Refinement | |||||
|---|---|---|---|---|---|
| Id | 1 | ||||
| Refinement Space | |||||
| Refinement Protocol | |||||
| Refinement Target | |||||
| Overall B Value | |||||
| Fitting Procedure | |||||
| Details | |||||
| Data Acquisition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Detector Type | GATAN K3 BIOQUANTUM (6k x 4k) | ||||||||
| Electron Dose (electrons/Å**2) | 63.88 | ||||||||
| Imaging Experiment | 1 |
|---|---|
| Date of Experiment | |
| Temperature (Kelvin) | |
| Microscope Model | TFS KRIOS |
| Minimum Defocus (nm) | 800 |
| Maximum Defocus (nm) | 1800 |
| Minimum Tilt Angle (degrees) | |
| Maximum Tilt Angle (degrees) | |
| Nominal CS | 2.7 |
| Imaging Mode | BRIGHT FIELD |
| Specimen Holder Model | FEI TITAN KRIOS AUTOGRID HOLDER |
| Nominal Magnification | |
| Calibrated Magnification | |
| Source | FIELD EMISSION GUN |
| Acceleration Voltage (kV) | 300 |
| Imaging Details |
| EM Software | ||
|---|---|---|
| Task | Software Package | Version |
| PARTICLE SELECTION | cryoSPARC | 3 |
| MODEL REFINEMENT | PHENIX | 1.21.1_5286 |
| IMAGE ACQUISITION | SerialEM | 4.0.5 |
| CTF CORRECTION | cryoSPARC | 3 |
| INITIAL EULER ASSIGNMENT | cryoSPARC | 3 |
| FINAL EULER ASSIGNMENT | cryoSPARC | 3 |
| RECONSTRUCTION | cryoSPARC | 3 |
| PARTICLE SELECTION | cryoSPARC | 3 |
| CTF CORRECTION | cryoSPARC | 3 |
| INITIAL EULER ASSIGNMENT | cryoSPARC | 3 |
| FINAL EULER ASSIGNMENT | cryoSPARC | 3 |
| RECONSTRUCTION | cryoSPARC | 3 |
| Image Processing | ||||
|---|---|---|---|---|
| CTF Correction Type | CTF Correction Details | Number of Particles Selected | Particle Selection Details | |
| PHASE FLIPPING AND AMPLITUDE CORRECTION | 3596857 | |||
| PHASE FLIPPING AND AMPLITUDE CORRECTION | 1830526 | |||
