9ZS0 | pdb_00009zs0

X-RAY DIFFRACTION

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	Other		in house model

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		293	0.2 M Ammonium citrate dibasic, 20% PEG-3350. (JCSG A3)

Crystal Properties
Matthews coefficient	Solvent content
2.45	49.74

Symmetry
Space Group	C 1 2 1

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER X 16M		2024-08-09	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	AUSTRALIAN SYNCHROTRON BEAMLINE MX2	0.95372	Australian Synchrotron	MX2

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2	49.22	100	0.999	12.3	28		84951

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2	2.04	98.9		0.853	1.4

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	2	49.268	84895	4294	99.923	0.204	0.2031	0.2169	0.2141	0.2308	RANDOM	46.865

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-4.988		-0.172	5.114		-0.049

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	13.202
r_dihedral_angle_3_deg	12.957
r_dihedral_angle_1_deg	5.828
r_dihedral_angle_2_deg	4.239
r_dihedral_angle_other_2_deg	1.253
r_angle_refined_deg	1.037
r_angle_other_deg	0.383
r_nbd_refined	0.209
r_symmetry_nbd_other	0.193
r_nbtor_refined	0.179

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	13.202
r_dihedral_angle_3_deg	12.957
r_dihedral_angle_1_deg	5.828
r_dihedral_angle_2_deg	4.239
r_dihedral_angle_other_2_deg	1.253
r_angle_refined_deg	1.037
r_angle_other_deg	0.383
r_nbd_refined	0.209
r_symmetry_nbd_other	0.193
r_nbtor_refined	0.179
r_nbd_other	0.135
r_xyhbond_nbd_refined	0.133
r_symmetry_xyhbond_nbd_refined	0.107
r_symmetry_nbd_refined	0.099
r_symmetry_nbtor_other	0.075
r_chiral_restr	0.051
r_symmetry_xyhbond_nbd_other	0.042
r_gen_planes_refined	0.004
r_bond_refined_d	0.002
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	8585
Nucleic Acid Atoms
Solvent Atoms	408
Heterogen Atoms	234

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.