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Equine Serum Albumin with Copper(II)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7MBL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.4 291.15 0.2 M lithium sulfate, 0.1 M Tris-HCl, pH 7.4, 2.2 M ammonium sulfate, 5 mM copper(II) chloride mixed 1:1 with 36 mg/mL protein, 10 mM Tris-HCl, 150 mM sodium chloride
Crystal Properties Matthews coefficient Solvent content 2.72 54.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 93.428 α = 90 b = 93.428 β = 90 c = 141.752 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210r 2015-04-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 1.28291 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.36 28 98.8 0.081 0.037 17.7 5.5 28717
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.36 2.4 0.48
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.65 26.985 20096 1013 98.529 0.194 0.1913 0.1939 0.2513 0.2528 35.847
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.403 0.202 0.403 -1.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.296 r_dihedral_angle_6_deg 13.28 r_lrange_it 6.68 r_dihedral_angle_2_deg 6.457 r_lrange_other 6.4 r_dihedral_angle_1_deg 5.209 r_scangle_it 3.39 r_scangle_other 3.38 r_mcangle_it 2.788 r_mcangle_other 2.788
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.296 r_dihedral_angle_6_deg 13.28 r_lrange_it 6.68 r_dihedral_angle_2_deg 6.457 r_lrange_other 6.4 r_dihedral_angle_1_deg 5.209 r_scangle_it 3.39 r_scangle_other 3.38 r_mcangle_it 2.788 r_mcangle_other 2.788 r_scbond_it 1.935 r_scbond_other 1.91 r_mcbond_it 1.608 r_mcbond_other 1.608 r_angle_refined_deg 1.067 r_angle_other_deg 0.416 r_nbd_other 0.333 r_symmetry_nbd_refined 0.283 r_nbd_refined 0.215 r_symmetry_nbd_other 0.196 r_metal_ion_refined 0.188 r_symmetry_xyhbond_nbd_refined 0.181 r_nbtor_refined 0.178 r_xyhbond_nbd_refined 0.156 r_symmetry_nbtor_other 0.069 r_chiral_restr 0.06 r_bond_refined_d 0.003 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4603 Nucleic Acid Atoms Solvent Atoms 230 Heterogen Atoms 43
Software Software Software Name Purpose REFMAC refinement HKL-3000 data reduction SCALEPACK data scaling MOLREP phasing