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Tra1, Core and minimal HAT modules of ctSAGA, composite.
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 4.3738 f_angle_d 0.4624 f_chiral_restr 0.0365 f_plane_restr 0.0044 f_bond_d 0.0021
Sample Tra1 module of ctSAGA complex
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details Embedding Material HEPES Buffer Embedding Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 3566416 Reported Resolution (Å) 3.5 Resolution Method OTHER Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 BIOQUANTUM (6k x 4k) Electron Dose (electrons/Å**2) 68.9
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS KRIOS Minimum Defocus (nm) 1200 Maximum Defocus (nm) 2500 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode OTHER Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION EMAN MODEL REFINEMENT PHENIX 1.21.2_5419+SVN RECONSTRUCTION RELION
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION