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Structure of A30P Alpha-synuclein Fibrils
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 1D 13C CP 1 mM [U-100% 13C; U-100% 15N] Alpha-synuclein 36% H2O 50 mM sodium phosphate 7.5 1 atm 273 Varian VNMRS 750 2 1D 13C DP 1 mM [U-100% 13C; U-100% 15N] Alpha-synuclein 36% H2O 50 mM sodium phosphate 7.5 1 atm 273 Varian VNMRS 750 3 1D 15N CP 1 mM [U-100% 13C; U-100% 15N] Alpha-synuclein 36% H2O 50 mM sodium phosphate 7.5 1 atm 273 Varian VNMRS 750 4 1D 15N DP 1 mM [U-100% 13C; U-100% 15N] Alpha-synuclein 36% H2O 50 mM sodium phosphate 7.5 1 atm 273 Varian VNMRS 750 5 2D 13C-13C DARR 50 ms 1 mM [U-100% 13C; U-100% 15N] Alpha-synuclein 36% H2O 50 mM sodium phosphate 7.5 1 atm 273 Varian VNMRS 750 19 2D 13C-13C DARR 125 ms 1 mM [U-100% 13C; U-100% 15N] Alpha-synuclein 36% H2O 50 mM sodium phosphate 7.5 1 atm 273 Varian VNMRS 750 18 2D 13C-13C DARR 500 ms 1 mM [U-100% 13C; U-100% 15N] Alpha-synuclein 36% H2O 50 mM sodium phosphate 7.5 1 atm 273 Varian VNMRS 750 17 2D 15N-13CA 1 mM [U-100% 13C; U-100% 15N] Alpha-synuclein 36% H2O 50 mM sodium phosphate 7.5 1 atm 273 Varian VNMRS 750 16 2D 15N-{13CA}-13CX DARR 50 ms 1 mM [U-100% 13C; U-100% 15N] Alpha-synuclein 36% H2O 50 mM sodium phosphate 7.5 1 atm 273 Varian VNMRS 750 15 3D 15N-13CA-13CX DARR 50 ms 1 mM [U-100% 13C; U-100% 15N] Alpha-synuclein 36% H2O 50 mM sodium phosphate 7.5 1 atm 273 Varian VNMRS 750 14 3D 15N-13CO-13CX DARR 50 ms 1 mM [U-100% 13C; U-100% 15N] Alpha-synuclein 36% H2O 50 mM sodium phosphate 7.5 1 atm 273 Varian VNMRS 750 13 3D 13CA-15N-13CO 1 mM [U-100% 13C; U-100% 15N] Alpha-synuclein 36% H2O 50 mM sodium phosphate 7.5 1 atm 273 Varian VNMRS 750 12 3D 13CA-15N-{13CO}-13CX DARR 50 ms 1 mM [U-100% 13C; U-100% 15N] Alpha-synuclein 36% H2O 50 mM sodium phosphate 7.5 1 atm 273 Varian VNMRS 750 11 3D 13C-13C-13C DARR 50, 500 ms 1 mM [U-100% 13C; U-100% 15N] Alpha-synuclein 36% H2O 50 mM sodium phosphate 7.5 1 atm 273 Varian VNMRS 750 10 3D 13C-13C-13C DARR 50, 500 ms 1 mM [U-100% 13C; U-100% 15N] Alpha-synuclein 36% H2O 50 mM sodium phosphate 7.5 1 atm 273 Varian VNMRS 750
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian VNMRS 750
NMR Refinement Method Details Software DGSA-distance geometry simulated annealing X-PLOR NIH
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 500 Conformers Submitted Total Number 10 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 2 structure calculation X-PLOR NIH 3.66 Schwieters, Kuszewski, Tjandra and Clore 3 chemical shift assignment NMRFAM-SPARKY 3.196 Lee, Tonelli, Markley 4 peak picking NMRFAM-SPARKY 3.196 Lee, Tonelli, Markley 5 data analysis NMRDraw Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 6 collection VnmrJ OVJ 3 Varian 7 refinement X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore