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Rubredoxin from Pyrococcus Furiosus at 100K, formyl-Methionine N-terminus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 VAPOR DIFFUSION AGAINST 3.1 M NaCl with 3.6M Na,K PHOSPHATE, pH 8.0
Crystal Properties Matthews coefficient Solvent content 2.16 41.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 33.961 α = 90 b = 34.403 β = 90 c = 43.365 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2024-06-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.88557 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 0.78 34.4 95.7 0.036 0.033 0.998 10.4 2.6 55180 8.801
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 0.78 0.8 61 1.336 1.336 0.114 1.4 1.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 0.78 26.95 52331 2724 95.33 0.13232 0.13195 0.1386 0.1395 0.1448 RANDOM 7.373
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.15 0.51 -0.36
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_other 68.846 r_long_range_B_refined 65.419 r_scangle_other 54.344 r_scbond_it 40.951 r_scbond_other 15.801 r_dihedral_angle_3_deg 7.91 r_rigid_bond_restr 6.137 r_dihedral_angle_1_deg 6.062 r_dihedral_angle_2_deg 4.381 r_mcangle_other 4.025
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_other 68.846 r_long_range_B_refined 65.419 r_scangle_other 54.344 r_scbond_it 40.951 r_scbond_other 15.801 r_dihedral_angle_3_deg 7.91 r_rigid_bond_restr 6.137 r_dihedral_angle_1_deg 6.062 r_dihedral_angle_2_deg 4.381 r_mcangle_other 4.025 r_mcangle_it 3.969 r_mcbond_it 2.962 r_mcbond_other 2.823 r_angle_refined_deg 1.816 r_angle_other_deg 0.638 r_chiral_restr 0.093 r_bond_refined_d 0.013 r_gen_planes_refined 0.012 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 423 Nucleic Acid Atoms Solvent Atoms 148 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction autoPROC data reduction Aimless data scaling HKL2Map phasing