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Quorum sensing and excision controller protein QseC crystal structure
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 293 0.1M HEPES sodium pH 7.5, 2% v/v Polyethylene glycol 400, 2.0M Ammonium sulfate
Crystal Properties Matthews coefficient Solvent content 1.66 26.03
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.206 α = 90 b = 46.206 β = 90 c = 68.989 γ = 90
Symmetry Space Group P 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2025-06-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 0.953725 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 46.21 100 0.091 0.093 0.019 0.999 16.9 25.4 13895
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.45 1.47 100 8.868 9.037 1.726 0.315 26.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION AB INITIO PHASING THROUGHOUT 1.45 46.21 13145 714 99.99 0.17735 0.17573 0.1757 0.20778 0.2073 RANDOM 29.1
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.63 0.63 -1.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.856 r_long_range_B_refined 8.658 r_long_range_B_other 8.605 r_scangle_other 6.752 r_dihedral_angle_1_deg 5.557 r_dihedral_angle_2_deg 5.341 r_scbond_it 4.555 r_scbond_other 4.482 r_mcangle_other 3.451 r_mcangle_it 3.446
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.856 r_long_range_B_refined 8.658 r_long_range_B_other 8.605 r_scangle_other 6.752 r_dihedral_angle_1_deg 5.557 r_dihedral_angle_2_deg 5.341 r_scbond_it 4.555 r_scbond_other 4.482 r_mcangle_other 3.451 r_mcangle_it 3.446 r_mcbond_other 2.242 r_mcbond_it 2.24 r_angle_refined_deg 1.184 r_angle_other_deg 0.425 r_chiral_restr 0.059 r_bond_refined_d 0.013 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 544 Nucleic Acid Atoms Solvent Atoms 64 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement Aimless data scaling PDB_EXTRACT data extraction XDS data reduction PHASER phasing