☰ Navigation Tabs
Crystal structure of sulX in complex with FMN
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model AlphaFold
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.5 298 24%PEG 500, 1.2 mM Zinc sulfate, 0.1 M MES pH 6.5
Crystal Properties Matthews coefficient Solvent content 3.95 68.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 134.066 α = 90 b = 134.066 β = 90 c = 139.984 γ = 120
Symmetry Space Group P 62 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX-300 2023-12-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSRRC BEAMLINE BL15A1 1.0 NSRRC BL15A1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.44 25 99.3 1 26.41 13.1 27846
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.45 2.54 0.923 2.28
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.44 24.91 26298 1423 98.38 0.19437 0.19194 0.2021 0.23981 0.2411 RANDOM 72.055
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.98 0.99 1.98 -6.42
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.944 r_dihedral_angle_4_deg 21.968 r_dihedral_angle_3_deg 17.422 r_long_range_B_refined 10.629 r_long_range_B_other 10.628 r_scangle_other 9.3 r_mcangle_it 8.033 r_mcangle_other 8.032 r_scbond_it 7.167 r_scbond_other 7.165
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.944 r_dihedral_angle_4_deg 21.968 r_dihedral_angle_3_deg 17.422 r_long_range_B_refined 10.629 r_long_range_B_other 10.628 r_scangle_other 9.3 r_mcangle_it 8.033 r_mcangle_other 8.032 r_scbond_it 7.167 r_scbond_other 7.165 r_dihedral_angle_1_deg 6.407 r_mcbond_it 6.265 r_mcbond_other 6.225 r_angle_refined_deg 1.743 r_angle_other_deg 1.324 r_chiral_restr 0.072 r_bond_refined_d 0.009 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3017 Nucleic Acid Atoms Solvent Atoms 41 Heterogen Atoms 52
Software Software Software Name Purpose REFMAC refinement SAINT data scaling PDB_EXTRACT data extraction SAINT data reduction PHASER phasing