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A Potent and Selective ROR gamma Inhibitor for the Treatment of Autoimmune Diseases
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 8X7E
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.2 295 80mM MES buffer (pH 6.2) in the presence of 9% PEG6,000.
Crystal Properties Matthews coefficient Solvent content 2.17 43.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.263 α = 90 b = 72.157 β = 90.025 c = 98.355 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M-F 2013-06-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-17A 0.98 Photon Factory BL-17A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.18 50 97.1 0.133 0.995 9.81 3.8 57764
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.18 2.31 94.3 0.484 1.03
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.18 49.177 57764 2903 98.712 0.181 0.1795 0.1884 0.2179 0.2248 44.817
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.001 0.009 0.007 -0.006
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.438 r_dihedral_angle_3_deg 15.103 r_lrange_it 9.614 r_lrange_other 9.61 r_scangle_it 7.851 r_scangle_other 7.85 r_dihedral_angle_2_deg 7.477 r_mcangle_it 6.977 r_mcangle_other 6.977 r_dihedral_angle_1_deg 5.572
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.438 r_dihedral_angle_3_deg 15.103 r_lrange_it 9.614 r_lrange_other 9.61 r_scangle_it 7.851 r_scangle_other 7.85 r_dihedral_angle_2_deg 7.477 r_mcangle_it 6.977 r_mcangle_other 6.977 r_dihedral_angle_1_deg 5.572 r_scbond_it 5.516 r_scbond_other 5.515 r_mcbond_it 5.181 r_mcbond_other 5.181 r_angle_refined_deg 1.677 r_angle_other_deg 0.542 r_symmetry_nbd_refined 0.285 r_xyhbond_nbd_refined 0.244 r_nbd_refined 0.222 r_nbd_other 0.204 r_symmetry_xyhbond_nbd_refined 0.197 r_symmetry_nbd_other 0.187 r_nbtor_refined 0.183 r_ncsr_local_group_9 0.124 r_ncsr_local_group_5 0.112 r_ncsr_local_group_10 0.112 r_ncsr_local_group_4 0.099 r_ncsr_local_group_6 0.097 r_ncsr_local_group_12 0.096 r_ncsr_local_group_1 0.081 r_ncsr_local_group_11 0.081 r_ncsr_local_group_3 0.079 r_chiral_restr 0.077 r_ncsr_local_group_7 0.077 r_symmetry_xyhbond_nbd_other 0.076 r_symmetry_nbtor_other 0.075 r_ncsr_local_group_2 0.073 r_ncsr_local_group_8 0.073 r_bond_refined_d 0.009 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7824 Nucleic Acid Atoms Solvent Atoms 124 Heterogen Atoms 104
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing