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Photo-Induced Distance-Dependent Electron Transfer of Fluorescent Proteins -PsmO-Cu8.8 (PSmOrange-copper-pH8.8)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 9X8J
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 0.2M NaCl, 20-28%
PEG3350
Crystal Properties Matthews coefficient Solvent content 1.89 34.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.014 α = 90 b = 82.399 β = 115.46 c = 37.215 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2023-06-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL10U2 0.72046 SSRF BL10U2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.33 82.4 98.4 0.062 0.994 14.3 6.2 44187
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.33 1.36 0.29 0.803
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.33 33.62 41871 2259 98.28 0.20068 0.20009 0.2064 0.21142 0.2177 RANDOM 8.612
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.18 0.02 -0.04 0.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.116 r_dihedral_angle_1_deg 7.362 r_dihedral_angle_2_deg 3.952 r_rigid_bond_restr 1.158 r_angle_refined_deg 1.064 r_long_range_B_refined 0.881 r_long_range_B_other 0.859 r_angle_other_deg 0.395 r_mcangle_it 0.249 r_mcangle_other 0.249
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.116 r_dihedral_angle_1_deg 7.362 r_dihedral_angle_2_deg 3.952 r_rigid_bond_restr 1.158 r_angle_refined_deg 1.064 r_long_range_B_refined 0.881 r_long_range_B_other 0.859 r_angle_other_deg 0.395 r_mcangle_it 0.249 r_mcangle_other 0.249 r_scangle_other 0.242 r_scbond_it 0.163 r_scbond_other 0.163 r_mcbond_it 0.155 r_mcbond_other 0.155 r_chiral_restr 0.056 r_bond_refined_d 0.005 r_gen_planes_refined 0.005 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1835 Nucleic Acid Atoms Solvent Atoms 58 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement Aimless data scaling DIALS data reduction MOLREP phasing PDB_EXTRACT data extraction