☰ Navigation Tabs
beta-lactoglobulin in complex with Perfluorooctanesulfonic acid (PFOS)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model AlphaFold
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293.15 1.8 M sodium phosphate monobasic monohydrate and potassium phosphate dibasic at pH 8.2
Crystal Properties Matthews coefficient Solvent content 2.477 50.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.36 α = 90 b = 53.36 β = 90 c = 110.197 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL RIGAKU HyPix-6000HE 2025-01-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.54184
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 28.75 99.9 0.159 14.6 18.83 6720
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.6 100 0.538 1.5 13.84
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE AlphaFold 2.5 23.116 6690 343 99.776 0.198 0.1946 0.1972 0.2613 0.2653 66.611
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.177 -0.089 -0.177 0.575
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 19.648 r_lrange_it 16.334 r_dihedral_angle_6_deg 13.343 r_scangle_it 11.879 r_mcangle_it 9.15 r_dihedral_angle_1_deg 8.196 r_scbond_it 7.952 r_dihedral_angle_2_deg 7.288 r_mcbond_it 5.888 r_angle_refined_deg 2.107
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 19.648 r_lrange_it 16.334 r_dihedral_angle_6_deg 13.343 r_scangle_it 11.879 r_mcangle_it 9.15 r_dihedral_angle_1_deg 8.196 r_scbond_it 7.952 r_dihedral_angle_2_deg 7.288 r_mcbond_it 5.888 r_angle_refined_deg 2.107 r_nbtor_refined 0.305 r_symmetry_nbd_refined 0.279 r_nbd_refined 0.255 r_xyhbond_nbd_refined 0.197 r_chiral_restr 0.146 r_symmetry_xyhbond_nbd_refined 0.113 r_gen_planes_refined 0.009 r_bond_refined_d 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1258 Nucleic Acid Atoms Solvent Atoms 9 Heterogen Atoms 30
Software Software Software Name Purpose REFMAC refinement CrysalisPro data reduction CrysalisPro data scaling MOLREP phasing