☰ Navigation Tabs
Crystal structure of Mus musculus monoclonal antibody for 1.4 angstrom
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6CNJ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 0.05 M Zinc Acetate dihydrate
20% w/v Polyethylene Glycol 3350
Crystal Properties Matthews coefficient Solvent content 2.14 42.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.787 α = 90 b = 61.503 β = 116.16 c = 90.842 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD Nonius Kappa CCD 2021-08-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U 0.97892 SSRF BL17U
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 81.53 99.61 0.035 39.5 6.3 115877
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.415 72.31 0.054 13 5.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.42 19.9 108622 5944 74.35 0.20723 0.20509 0.24597 RANDOM 31.227
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 -0.01 0.02 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.984 r_dihedral_angle_4_deg 18.366 r_dihedral_angle_3_deg 15.176 r_dihedral_angle_1_deg 7.414 r_long_range_B_other 6.802 r_long_range_B_refined 6.8 r_scangle_other 5.395 r_scbond_it 3.603 r_scbond_other 3.603 r_mcangle_it 3.505
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.984 r_dihedral_angle_4_deg 18.366 r_dihedral_angle_3_deg 15.176 r_dihedral_angle_1_deg 7.414 r_long_range_B_other 6.802 r_long_range_B_refined 6.8 r_scangle_other 5.395 r_scbond_it 3.603 r_scbond_other 3.603 r_mcangle_it 3.505 r_mcangle_other 3.504 r_mcbond_it 2.554 r_mcbond_other 2.553 r_angle_refined_deg 1.57 r_angle_other_deg 1.358 r_chiral_restr 0.07 r_bond_refined_d 0.01 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6617 Nucleic Acid Atoms Solvent Atoms 339 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction HKL-2000 data scaling PHASER phasing