9WGN | pdb_00009wgn

X-RAY DIFFRACTION

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	4IH4

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		298	1.8 M Magnesium sulfate hydrate, 0.1 M Tris pH 8.5

Crystal Properties
Matthews coefficient	Solvent content
2.68	54.07

Symmetry
Space Group	P 32 2 1

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER X 9M		2018-05-27	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SOLEIL BEAMLINE PROXIMA 2	0.987	SOLEIL	PROXIMA 2

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.4	39.21	94.08	0.75	32.15	17.5		64078

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.4	1.45	72.66		0.491	0.88	9.2

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	1.4	39.21	58981	1892	93.69	0.14717	0.14627	0.1727	0.17531	0.1936	RANDOM	23.822

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.44	-0.22		-0.44		1.44

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	29.523
r_sphericity_free	27.463
r_dihedral_angle_4_deg	19.516
r_sphericity_bonded	17.964
r_dihedral_angle_3_deg	13.613
r_dihedral_angle_1_deg	6.473
r_long_range_B_refined	4.595
r_long_range_B_other	4.278
r_scangle_other	3.501
r_rigid_bond_restr	3.179

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	29.523
r_sphericity_free	27.463
r_dihedral_angle_4_deg	19.516
r_sphericity_bonded	17.964
r_dihedral_angle_3_deg	13.613
r_dihedral_angle_1_deg	6.473
r_long_range_B_refined	4.595
r_long_range_B_other	4.278
r_scangle_other	3.501
r_rigid_bond_restr	3.179
r_mcangle_it	3.128
r_mcangle_other	3.126
r_scbond_it	2.915
r_scbond_other	2.915
r_mcbond_it	2.47
r_mcbond_other	2.454
r_angle_refined_deg	1.639
r_angle_other_deg	1.54
r_chiral_restr	0.099
r_bond_refined_d	0.012
r_gen_planes_refined	0.01
r_gen_planes_other	0.002
r_bond_other_d	0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2060
Nucleic Acid Atoms
Solvent Atoms	218
Heterogen Atoms	8

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.