Experiment: 9WGH

Solution structure of human VAPB MSP domain

SOLUTION NMR

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	0.5 mM [U-100% 15N] VAPB, 50 mM potassium phosphate, 50 mM potassium chloride, 1 mM DTT	95% H2O/5% D2O	50 mM	6.8	1 atm	303	Bruker AVANCE III HD 600
2	3D HNCO	0.5 mM [U-100% 13C; U-100% 15N] VAPB, 50 mM potassium phosphate, 50 mM potassium chloride, 1 mM DTT	95% H2O/5% D2O	50 mM	6.8	1 atm	303	Bruker AVANCE III HD 600
3	3D HN(CA)CO	0.5 mM [U-100% 13C; U-100% 15N] VAPB, 50 mM potassium phosphate, 50 mM potassium chloride, 1 mM DTT	95% H2O/5% D2O	50 mM	6.8	1 atm	303	Bruker AVANCE III HD 600
4	3D HNCACB	0.5 mM [U-100% 13C; U-100% 15N] VAPB, 50 mM potassium phosphate, 50 mM potassium chloride, 1 mM DTT	95% H2O/5% D2O	50 mM	6.8	1 atm	303	Bruker AVANCE III HD 600
5	3D CBCA(CO)NH	0.5 mM [U-100% 13C; U-100% 15N] VAPB, 50 mM potassium phosphate, 50 mM potassium chloride, 1 mM DTT	95% H2O/5% D2O	50 mM	6.8	1 atm	303	Bruker AVANCE III HD 600
6	3D HBHA(CO)NH	0.5 mM [U-100% 13C; U-100% 15N] VAPB, 50 mM potassium phosphate, 50 mM potassium chloride, 1 mM DTT	95% H2O/5% D2O	50 mM	6.8	1 atm	303	Bruker AVANCE III HD 600
7	3D HCCH-TOCSY	0.5 mM [U-100% 13C; U-100% 15N] VAPB, 50 mM potassium phosphate, 50 mM potassium chloride, 1 mM DTT	95% H2O/5% D2O	50 mM	6.8	1 atm	303	Bruker AVANCE III HD 600
8	3D 1H-13C NOESY aliphatic	0.5 mM [U-100% 13C; U-100% 15N] VAPB, 50 mM potassium phosphate, 50 mM potassium chloride, 1 mM DTT	95% H2O/5% D2O	50 mM	6.8	1 atm	303	Bruker AVANCE III HD 800
10	3D 1H-13C NOESY aromatic	0.5 mM [U-100% 13C; U-100% 15N] VAPB, 50 mM potassium phosphate, 50 mM potassium chloride, 1 mM DTT	95% H2O/5% D2O	50 mM	6.8	1 atm	303	Bruker AVANCE III HD 800
9	3D 1H-15N NOESY	0.5 mM [U-100% 15N] VAPB, 50 mM potassium phosphate, 50 mM potassium chloride, 1 mM DTT	95% H2O/5% D2O	50 mM	6.8	1 atm	303	Bruker AVANCE III HD 800

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE III HD	600
2	Bruker	AVANCE III HD	800

NMR Refinement
Method	Details	Software
simulated annealing		Amber

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	100
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3	peak picking	MagRO-NMRView		Naohiro Kobayashi
4	chemical shift assignment	CYANA		Guntert, Mumenthaler and Wuthrich
5	chemical shift assignment	Poky		Manthey, Tonelli, Clos II, Rahimi, Markley and Lee
2	structure calculation	CYANA		Guntert, Mumenthaler and Wuthrich
6	refinement	Amber		Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman
7	peak picking	NMRtist		Klukowski, Riek and Guntert

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.