☰ Navigation Tabs
hCA450-21.1 Fab and GD2 complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model AlphaFold
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 291.15 0.1 M HEPES sodium (pH 7.5), 1% (v/v) polyethylene glycol 400 (PEG 400), and 2.2 M ammonium
Crystal Properties Matthews coefficient Solvent content 3.77 67.37
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.48 α = 90 b = 109.19 β = 90 c = 170.21 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2025-03-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL19U1 0.97861 SSRF BL19U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.69 42.553 99.95 0.2 9 12.9 157524
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.69 1.734 0.293
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.69 42.553 157524 8080 99.949 0.182 0.181 0.1829 0.2053 0.2075 23.268
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.838 1.414 -0.576
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.544 r_dihedral_angle_3_deg 11.949 r_dihedral_angle_2_deg 8.109 r_lrange_it 7.364 r_dihedral_angle_1_deg 7.294 r_lrange_other 7.288 r_scangle_it 5.249 r_scangle_other 5.248 r_mcangle_it 3.669 r_mcangle_other 3.668
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.544 r_dihedral_angle_3_deg 11.949 r_dihedral_angle_2_deg 8.109 r_lrange_it 7.364 r_dihedral_angle_1_deg 7.294 r_lrange_other 7.288 r_scangle_it 5.249 r_scangle_other 5.248 r_mcangle_it 3.669 r_mcangle_other 3.668 r_scbond_it 3.466 r_scbond_other 3.466 r_mcbond_it 2.519 r_mcbond_other 2.519 r_angle_refined_deg 1.866 r_angle_other_deg 0.642 r_nbd_refined 0.22 r_symmetry_nbd_other 0.2 r_nbd_other 0.187 r_symmetry_nbd_refined 0.181 r_nbtor_refined 0.175 r_xyhbond_nbd_refined 0.151 r_symmetry_xyhbond_nbd_refined 0.113 r_chiral_restr 0.093 r_symmetry_nbtor_other 0.091 r_bond_refined_d 0.011 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6513 Nucleic Acid Atoms Solvent Atoms 792 Heterogen Atoms 194
Software Software Software Name Purpose REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling PHENIX phasing