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Carbonyl reductase SxPR mutant-Q158AM198A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4BMS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 289 0.2 M Sodium acetate trihydrate
0.1 M TRIS hydrochloride pH 8.5
30% w/v Polyethylene glycol 4,000
Crystal Properties Matthews coefficient Solvent content 1.98 37.94
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.981 α = 90 b = 79.981 β = 90 c = 130.79 γ = 90
Symmetry Space Group C 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2024-09-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL02U1 0.979 SSRF BL02U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 43.6 99 0.138 14.6 12.2 35778
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.89 0.867
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.85 42.78 33597 1679 97.47 0.20391 0.20254 0.2146 0.23118 0.2457 RANDOM 47.76
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.46 -4.23 5.69
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.809 r_dihedral_angle_4_deg 18.626 r_dihedral_angle_3_deg 14.791 r_dihedral_angle_1_deg 5.868 r_long_range_B_other 4.709 r_long_range_B_refined 4.708 r_mcangle_it 2.893 r_mcangle_other 2.892 r_scangle_other 2.761 r_mcbond_it 1.833
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.809 r_dihedral_angle_4_deg 18.626 r_dihedral_angle_3_deg 14.791 r_dihedral_angle_1_deg 5.868 r_long_range_B_other 4.709 r_long_range_B_refined 4.708 r_mcangle_it 2.893 r_mcangle_other 2.892 r_scangle_other 2.761 r_mcbond_it 1.833 r_mcbond_other 1.833 r_scbond_it 1.779 r_scbond_other 1.779 r_angle_refined_deg 1.454 r_angle_other_deg 0.814 r_chiral_restr 0.076 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3622 Nucleic Acid Atoms Solvent Atoms 45 Heterogen Atoms 96
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction HKL-3000 data reduction XDS data scaling PHASER phasing