9VR0 | pdb_00009vr0

NMR solution structure of termini-truncated oxidized cytochrome c552 from Thioalkalivibrio paradoxus

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c552, 50 mM sodium phosphate buffer	95% H2O/5% D2O	50 mM	7.0	1 atm	303	Bruker AVANCE III 600
2	2D 1H-13C HSQC aliphatic	0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c552, 50 mM sodium phosphate buffer	95% H2O/5% D2O	50 mM	7.0	1 atm	303	Bruker AVANCE III 600
3	2D 1H-13C HSQC aromatic	0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c552, 50 mM sodium phosphate buffer	95% H2O/5% D2O	50 mM	7.0	1 atm	303	Bruker AVANCE III 600
4	3D 1H-15N NOESY	0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c552, 50 mM sodium phosphate buffer	95% H2O/5% D2O	50 mM	7.0	1 atm	303	Bruker AVANCE III 600
5	3D 1H-15N TOCSY	0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c552, 50 mM sodium phosphate buffer	95% H2O/5% D2O	50 mM	7.0	1 atm	303	Bruker AVANCE III 600
6	3D 1H-13C NOESY aliphatic	0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c552, 50 mM sodium phosphate buffer	95% H2O/5% D2O	50 mM	7.0	1 atm	303	Bruker AVANCE III 600
7	3D HNCA	0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c552, 50 mM sodium phosphate buffer	95% H2O/5% D2O	50 mM	7.0	1 atm	303	Bruker AVANCE III 600
8	3D HN(CO)CA	0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c552, 50 mM sodium phosphate buffer	95% H2O/5% D2O	50 mM	7.0	1 atm	303	Bruker AVANCE III 600
9	3D HNCO	0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c552, 50 mM sodium phosphate buffer	95% H2O/5% D2O	50 mM	7.0	1 atm	303	Bruker AVANCE III 600
10	3D HCACO	0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c552, 50 mM sodium phosphate buffer	95% H2O/5% D2O	50 mM	7.0	1 atm	303	Bruker AVANCE III 600
11	3D HNHA	0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c552, 50 mM sodium phosphate buffer	95% H2O/5% D2O	50 mM	7.0	1 atm	303	Bruker AVANCE III 600
12	3D HCCH-TOCSY	0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c552, 50 mM sodium phosphate buffer	95% H2O/5% D2O	50 mM	7.0	1 atm	303	Bruker AVANCE III 600
13	3D HNCACB	0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c552, 50 mM sodium phosphate buffer	95% H2O/5% D2O	50 mM	7.0	1 atm	303	Bruker AVANCE III 600
14	3D HBHA(CO)NH	0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c552, 50 mM sodium phosphate buffer	95% H2O/5% D2O	50 mM	7.0	1 atm	303	Bruker AVANCE III 600
15	3D H(CCO)NH	0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c552, 50 mM sodium phosphate buffer	95% H2O/5% D2O	50 mM	7.0	1 atm	303	Bruker AVANCE III 600
16	2D 1H-1H NOESY	0.6 mM Cytochrome c552, 50 mM sodium phosphate buffer	95% H2O/5% D2O	50 mM	7.0	1 atm	303	Bruker AVANCE III 600
17	2D 1H-1H TOCSY	0.6 mM Cytochrome c552, 50 mM sodium phosphate buffer	95% H2O/5% D2O	50 mM	7.0	1 atm	303	Bruker AVANCE III 600

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE III	600

NMR Refinement
Method	Details	Software
molecular dynamics	explicit water refinment	CNS

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	128
Conformers Submitted Total Number	20
Representative Model	1 (medoid)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	chemical shift assignment	CcpNmr Analysis	2.5.2	CCPN
2	refinement	CNS	1.3	Brunger, Adams, Clore, Gros, Nilges and Read
3	structure calculation	CNS	1.3	Brunger, Adams, Clore, Gros, Nilges and Read
4	chemical shift assignment	ARIA	2.3	Linge, O'Donoghue and Nilges
5	peak picking	CcpNmr Analysis	2.5.2	CCPN
6	collection	TopSpin	3.2	Bruker Biospin
7	processing	TopSpin	3.2	Bruker Biospin