Experiment: 9VOY

X-RAY DIFFRACTION

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	Other		Implemented by subcontractors

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION		293	8.0% v/v ethylene glycol; 0.1M HEPES pH 7.25; 10% w/v PEG 10K

Crystal Properties
Matthews coefficient	Solvent content
3.55	65.39

Symmetry
Space Group	I 2 3

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER2 X CdTe 16M		2024-10-04	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ESRF BEAMLINE ID23-1	0.8856	ESRF	ID23-1

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	R Sym I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.67	103.18	99.8	0.284	0.284	12.2	41.3		14735

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	R-Sym I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.674	2.72	100		3.35	3.35	1.3	37.1

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	2.67	103.18	13948	763	99.39	0.19944	0.19725	0.2032	0.23935	0.2396	RANDOM	60.043

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	12.404
r_long_range_B_other	8.936
r_long_range_B_refined	8.935
r_dihedral_angle_2_deg	7.417
r_dihedral_angle_1_deg	6.576
r_mcangle_other	6.21
r_mcangle_it	6.209
r_scangle_other	5.704
r_mcbond_it	3.69
r_mcbond_other	3.69

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	12.404
r_long_range_B_other	8.936
r_long_range_B_refined	8.935
r_dihedral_angle_2_deg	7.417
r_dihedral_angle_1_deg	6.576
r_mcangle_other	6.21
r_mcangle_it	6.209
r_scangle_other	5.704
r_mcbond_it	3.69
r_mcbond_other	3.69
r_scbond_it	3.416
r_scbond_other	3.415
r_angle_refined_deg	1.286
r_angle_other_deg	0.687
r_chiral_restr	0.06
r_bond_other_d	0.005
r_bond_refined_d	0.004
r_gen_planes_refined	0.004
r_gen_planes_other	0.002
r_dihedral_angle_4_deg
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2446
Nucleic Acid Atoms
Solvent Atoms	51
Heterogen Atoms	36