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Crystal structure of Bacillus subtilis DegQ S25L mutant
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 15%(v/v) polyethylene glycol 3350, 5 mM magnesium chloride, 0.1 M HEPES
Crystal Properties Matthews coefficient Solvent content 1.74 29.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 27.715 α = 90 b = 41.92 β = 90 c = 132.602 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 CCD ADSC QUANTUM 210 2017-05-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 1.03912 Photon Factory AR-NW12A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 100 99.9 0.085 19.8 13.9 21288
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.66 100 0.543 6.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION AB INITIO PHASING THROUGHOUT 1.6 27.144 21147 1094 99.408 0.212 0.21 0.2182 0.2545 0.2665 15.533
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.041 0.007 0.034
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 12.635 r_dihedral_angle_6_deg 11.661 r_dihedral_angle_1_deg 3.604 r_lrange_it 3.555 r_lrange_other 3.375 r_dihedral_angle_2_deg 2.832 r_mcangle_it 1.4 r_mcangle_other 1.399 r_scangle_it 1.277 r_scangle_other 1.276
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 12.635 r_dihedral_angle_6_deg 11.661 r_dihedral_angle_1_deg 3.604 r_lrange_it 3.555 r_lrange_other 3.375 r_dihedral_angle_2_deg 2.832 r_mcangle_it 1.4 r_mcangle_other 1.399 r_scangle_it 1.277 r_scangle_other 1.276 r_angle_refined_deg 0.905 r_mcbond_it 0.763 r_mcbond_other 0.763 r_scbond_it 0.717 r_scbond_other 0.716 r_angle_other_deg 0.359 r_nbd_other 0.224 r_nbd_refined 0.216 r_symmetry_nbd_refined 0.205 r_symmetry_nbd_other 0.175 r_nbtor_refined 0.174 r_symmetry_xyhbond_nbd_refined 0.134 r_xyhbond_nbd_refined 0.106 r_symmetry_nbtor_other 0.066 r_chiral_restr 0.043 r_bond_refined_d 0.002 r_gen_planes_refined 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1521 Nucleic Acid Atoms Solvent Atoms 162 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling Arcimboldo phasing