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Structural complex of FTO bound with 8j
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4QKN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.6 289 100 mM sodium citrate, pH 5.6, 11.5% (w/v) polyethylene glycol (PEG) 3350,8% isopropanol.
Crystal Properties Matthews coefficient Solvent content 2.87 61.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 141.83 α = 90 b = 141.83 β = 90 c = 83.39 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2024-04-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL19U1 0.97923 SSRF BL19U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 70.92 99.8 0.044 11.2 9.2 26483
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.36 0.044
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.3 70.92 26483 1249 99.79 0.20486 0.20253 0.208 0.2518 0.2571 RANDOM 59.847
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.6 -0.3 -0.6 1.95
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 17 r_long_range_B_other 11.889 r_long_range_B_refined 11.885 r_scangle_other 9.305 r_mcangle_it 8.681 r_mcangle_other 8.679 r_dihedral_angle_1_deg 7.687 r_scbond_it 7.106 r_scbond_other 7.104 r_dihedral_angle_2_deg 6.881
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 17 r_long_range_B_other 11.889 r_long_range_B_refined 11.885 r_scangle_other 9.305 r_mcangle_it 8.681 r_mcangle_other 8.679 r_dihedral_angle_1_deg 7.687 r_scbond_it 7.106 r_scbond_other 7.104 r_dihedral_angle_2_deg 6.881 r_mcbond_it 6.646 r_mcbond_other 6.646 r_angle_refined_deg 1.575 r_angle_other_deg 0.547 r_chiral_restr 0.072 r_gen_planes_refined 0.009 r_bond_refined_d 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3356 Nucleic Acid Atoms Solvent Atoms 35 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction HKL-2000 data scaling PHASER phasing