9VFF | pdb_00009vff

Solution structure of XPC binding domain of a hHR23B variant - H274N/H323Q

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	3D HNCA	1.1 mM [U-100% 13C; U-100% 15N] UV excision repair protein RAD23 homolog B, 20 mM sodium phosphate, 160 mM sodium chloride	5 % v/v [U-100% 2H] D2O, 95 % v/v H2O	160 mM	7.4	1 atm	300	Bruker AVANCE NEO 600
2	CBCANH	1.1 mM [U-100% 13C; U-100% 15N] UV excision repair protein RAD23 homolog B, 20 mM sodium phosphate, 160 mM sodium chloride	5 % v/v [U-100% 2H] D2O, 95 % v/v H2O	160 mM	7.4	1 atm	300	Bruker AVANCE NEO 600
3	3D CBCA(CO)NH	1.1 mM [U-100% 13C; U-100% 15N] UV excision repair protein RAD23 homolog B, 20 mM sodium phosphate, 160 mM sodium chloride	5 % v/v [U-100% 2H] D2O, 95 % v/v H2O	160 mM	7.4	1 atm	300	Bruker AVANCE NEO 600
4	3D HBHA(CO)NH	1.1 mM [U-100% 13C; U-100% 15N] UV excision repair protein RAD23 homolog B, 20 mM sodium phosphate, 160 mM sodium chloride	5 % v/v [U-100% 2H] D2O, 95 % v/v H2O	160 mM	7.4	1 atm	300	Bruker AVANCE NEO 600
5	3D C(CO)NH	1.1 mM [U-100% 13C; U-100% 15N] UV excision repair protein RAD23 homolog B, 20 mM sodium phosphate, 160 mM sodium chloride	5 % v/v [U-100% 2H] D2O, 95 % v/v H2O	160 mM	7.4	1 atm	300	Bruker AVANCE NEO 600
6	3D HCCH-TOCSY	1.1 mM [U-100% 13C; U-100% 15N] UV excision repair protein RAD23 homolog B, 20 mM sodium phosphate, 160 mM sodium chloride	5 % v/v [U-100% 2H] D2O, 95 % v/v H2O	160 mM	7.4	1 atm	300	Bruker AVANCE NEO 800
7	3D 1H-13C NOESY	1.1 mM [U-100% 13C; U-100% 15N] UV excision repair protein RAD23 homolog B, 20 mM sodium phosphate, 160 mM sodium chloride	5 % v/v [U-100% 2H] D2O, 95 % v/v H2O	160 mM	7.4	1 atm	300	Bruker AVANCE NEO 800
8	3D 1H-15N NOESY	1.1 mM [U-100% 13C; U-100% 15N] UV excision repair protein RAD23 homolog B, 20 mM sodium phosphate, 160 mM sodium chloride	5 % v/v [U-100% 2H] D2O, 95 % v/v H2O	160 mM	7.4	1 atm	300	Bruker AVANCE NEO 800
9	2D 1H-15N HSQC	1.1 mM [U-100% 13C; U-100% 15N] UV excision repair protein RAD23 homolog B, 20 mM sodium phosphate, 160 mM sodium chloride	5 % v/v [U-100% 2H] D2O, 95 % v/v H2O	160 mM	7.4	1 atm	300	Bruker AVANCE NEO 800

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE NEO	600
2	Bruker	AVANCE NEO	800

NMR Refinement
Method	Details	Software
matrix relaxation		X-PLOR NIH

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	20
Conformers Submitted Total Number	10
Representative Model	1 (closest to the average)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	chemical shift assignment	CYANA	3.98.15	Guntert, Mumenthaler and Wuthrich
2	structure calculation	CYANA		Guntert, Mumenthaler and Wuthrich
3	refinement	X-PLOR NIH	3.7.0.1	Schwieters, Kuszewski, Tjandra and Clore
4	peak picking	ARTINA	3.2	Klukowski, P., Riek, R. and Guntert, P.
5	collection	TopSpin	4.0	Bruker Biospin
6	processing	TopSpin	4.2	Bruker Biospin