9VFE | pdb_00009vfe

Solution structure of XPC binding domain of hHR23B (apo form)


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D HNCA1.1 mM [U-100% 13C; U-100% 15N] UV excision repair protein RAD23 homolog B, 20 mM sodium phosphate, 160 mM sodium chloride95% H2O/5% [U-100% 2H] D2O160 mM7.41 atm300Bruker AVANCE NEO 600
2CBCANH1.1 mM [U-100% 13C; U-100% 15N] UV excision repair protein RAD23 homolog B, 20 mM sodium phosphate, 160 mM sodium chloride95% H2O/5% [U-100% 2H] D2O160 mM7.41 atm300Bruker AVANCE NEO 600
33D CBCA(CO)NH1.1 mM [U-100% 13C; U-100% 15N] UV excision repair protein RAD23 homolog B, 20 mM sodium phosphate, 160 mM sodium chloride95% H2O/5% [U-100% 2H] D2O160 mM7.41 atm300Bruker AVANCE NEO 600
43D HBHA(CO)NH1.1 mM [U-100% 13C; U-100% 15N] UV excision repair protein RAD23 homolog B, 20 mM sodium phosphate, 160 mM sodium chloride95% H2O/5% [U-100% 2H] D2O160 mM7.41 atm300Bruker AVANCE NEO 600
53D C(CO)NH1.1 mM [U-100% 13C; U-100% 15N] UV excision repair protein RAD23 homolog B, 20 mM sodium phosphate, 160 mM sodium chloride95% H2O/5% [U-100% 2H] D2O160 mM7.41 atm300Bruker AVANCE NEO 600
63D HCCH-TOCSY1.1 mM [U-100% 13C; U-100% 15N] UV excision repair protein RAD23 homolog B, 20 mM sodium phosphate, 160 mM sodium chloride95% H2O/5% [U-100% 2H] D2O160 mM7.41 atm300Bruker AVANCE NEO 800
73D 1H-13C NOESY1.1 mM [U-100% 13C; U-100% 15N] UV excision repair protein RAD23 homolog B, 20 mM sodium phosphate, 160 mM sodium chloride95% H2O/5% [U-100% 2H] D2O160 mM7.41 atm300Bruker AVANCE NEO 800
83D 1H-15N NOESY1.1 mM [U-100% 13C; U-100% 15N] UV excision repair protein RAD23 homolog B, 20 mM sodium phosphate, 160 mM sodium chloride95% H2O/5% [U-100% 2H] D2O160 mM7.41 atm300Bruker AVANCE NEO 800
92D 1H-15N HSQC1.1 mM [U-100% 13C; U-100% 15N] UV excision repair protein RAD23 homolog B, 20 mM sodium phosphate, 160 mM sodium chloride95% H2O/5% [U-100% 2H] D2O160 mM7.41 atm300Bruker AVANCE NEO 800
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE NEO600
2BrukerAVANCE NEO800
NMR Refinement
MethodDetailsSoftware
matrix relaxationX-PLOR NIH
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number20
Conformers Submitted Total Number10
Representative Model1 (closest to the average)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1chemical shift assignmentCYANA3.98.15Guntert, Mumenthaler and Wuthrich
2structure calculationCYANAGuntert, Mumenthaler and Wuthrich
3refinementX-PLOR NIH3.7.0.1Schwieters, Kuszewski, Tjandra and Clore
4peak pickingCYANA3.2Guntert, Mumenthaler and Wuthrich now ARTINA/NMRtist: assignments. ARTINA can be used by non-experts, reducing the effort for a protein assignment or structure determination by NMR essentially to the preparation of the sample and the spectra measurements. Klukowski, P., Riek, R. and Guentert, P. Rapid protein assignments and structures from raw NMR spectra with the deep learning technique ARTINA (2022). Nature Communications 13, 6151
5collectionTopSpin4.0Bruker Biospin
6processingTopSpin4.2Bruker Biospin