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Phycobilisome Rx rod from Gloeobacter violaceus PCC 7421
Refinement RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 17.139 r_dihedral_angle_3_deg 17.008 r_dihedral_angle_6_deg 15.188 r_lrange_it 5.671 r_lrange_other 5.671 r_dihedral_angle_1_deg 4.844 r_scangle_it 4.283 r_scangle_other 4.283 r_mcangle_it 3.391 r_mcangle_other 3.391
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 17.139 r_dihedral_angle_3_deg 17.008 r_dihedral_angle_6_deg 15.188 r_lrange_it 5.671 r_lrange_other 5.671 r_dihedral_angle_1_deg 4.844 r_scangle_it 4.283 r_scangle_other 4.283 r_mcangle_it 3.391 r_mcangle_other 3.391 r_scbond_it 2.502 r_scbond_other 2.502 r_mcbond_it 2.164 r_mcbond_other 2.164 r_angle_refined_deg 1.581 r_angle_other_deg 0.661 r_nbd_refined 0.219 r_symmetry_nbd_other 0.211 r_nbtor_refined 0.187 r_xyhbond_nbd_refined 0.167 r_ncsr_local_group_22 0.112 r_ncsr_local_group_7 0.111 r_ncsr_local_group_8 0.109 r_ncsr_local_group_27 0.108 r_ncsr_local_group_23 0.103 r_ncsr_local_group_15 0.102 r_ncsr_local_group_16 0.102 r_ncsr_local_group_28 0.102 r_ncsr_local_group_9 0.101 r_ncsr_local_group_10 0.1 r_ncsr_local_group_24 0.099 r_ncsr_local_group_17 0.098 r_chiral_restr 0.097 r_ncsr_local_group_2 0.096 r_ncsr_local_group_18 0.096 r_ncsr_local_group_4 0.091 r_ncsr_local_group_6 0.089 r_ncsr_local_group_11 0.089 r_ncsr_local_group_13 0.088 r_ncsr_local_group_21 0.088 r_ncsr_local_group_30 0.088 r_ncsr_local_group_3 0.087 r_ncsr_local_group_29 0.087 r_ncsr_local_group_1 0.084 r_ncsr_local_group_14 0.084 r_ncsr_local_group_20 0.083 r_ncsr_local_group_26 0.082 r_ncsr_local_group_5 0.081 r_ncsr_local_group_12 0.079 r_symmetry_nbtor_other 0.077 r_ncsr_local_group_19 0.077 r_ncsr_local_group_25 0.075 r_symmetry_xyhbond_nbd_other 0.061 r_bond_refined_d 0.009 r_gen_planes_refined 0.008 r_gen_planes_other 0.004 r_bond_other_d 0.001
Sample Bundle-shaped phycobilisome
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 746972 Reported Resolution (Å) 2.72 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 BIOQUANTUM (6k x 4k) Electron Dose (electrons/Å**2) 66
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS KRIOS Minimum Defocus (nm) 600 Maximum Defocus (nm) 1600 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 0.01 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 85000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details Preliminary grid screening was performed manually.
EM Software Task Software Package Version IMAGE ACQUISITION SerialEM 4.04 CTF CORRECTION Warp 1.0.9 FINAL EULER ASSIGNMENT cryoSPARC 4.7 RECONSTRUCTION cryoSPARC 4.7
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details NONE